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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
| Species | TF ID | Description |
|---|---|---|
Eragrostis tef (23) | 462861075 | GATA family protein |
| 462880529 | GATA family protein | |
| 462884437 | GATA family protein | |
| 462894455 | GATA family protein | |
| 462895064 | GATA family protein | |
| 462899018 | GATA family protein | |
| 462900609 | GATA family protein | |
| 462909531 | GATA family protein | |
| 462910903 | GATA family protein | |
| 462911167 | GATA family protein | |
| 462915870 | GATA family protein | |
| 462922341 | GATA family protein | |
| 462922344 | GATA family protein | |
| 462927065 | GATA family protein | |
| 462928763 | GATA family protein | |
| 462933062 | GATA family protein | |
| 462936353 | GATA family protein | |
| 462936362 | GATA family protein | |
| 462951411 | GATA family protein | |
| 462953442 | GATA family protein | |
| 462958519 | GATA family protein | |
| 462966309 | GATA family protein | |
| 462967448 | GATA family protein |
GATA factors were first identified as proteins that interact with conserved WGATAR (W = T or A; R = G or A) motifs involved in erythroid-specific gene expressionin vertebrates.
GATA factors are characterised by the presence of conserved, type-IV zinc-finger motifs Animal factors typically contain two C-x2-Cx17-C-x2-C zinc-finger domains. The majority of known fungal GATA factors contain a single C-x2-C-x17-C-x2-C finger with greatest similarity to the carboxyl (C) terminal finger of animal GATA factors.Several examples of fungal GATA factors containing a variant C-x2-C-x18-C-x2-C DNA-binding domain are also known.
Examples of both C-x2-C-x17-Cx2-C (Type IVa) and C-x2-C-x18-C-x2-C (Type IVb) GATA factors are found within fungi; animals onlycontain the former configuration, and plants only the latter. Plant GATA factors typically contain a single zinc finger. The Arabidopsis type-IV zinc-finger proteins may represent the previously defined family of nuclear GATA-binding proteins implicated in light-responsive transcription.
Teakle GR, Manfield IW, Graham JF, Gilmartin PM.
Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics.
Plant Mol Biol. 2002 Sep;50(1):43-57.
PMID: 12139008




