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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Phylogenetic Tree for OGEM1116
| Phylogenetic tree for protein ? help Back to Top |
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Subtree rooted at node 168:
/-------------------- Thecc1EG034439t1 [Theobroma cacao] (5)
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| /---------- Gh_A05G1905 [Gossypium hirsutum] (27)
| |
/-100+ /-100+ /----- Gh_D05G2140 [Gossypium hirsutum] (40)
| | | \-100+
| | | \----- Gorai.009G233000.1 [Gossypium raimondii] (45)
| | |
| \-95-+ /----- Gh_A02G0792 [Gossypium hirsutum] (39)
| | /-100+
| | | \----- Cotton_A_15447_BGI-A2_v1.0 [Gossypium arboreum] (67)
| \-100+
/-100+ | /----- Gorai.005G094800.1 [Gossypium raimondii] (50)
| | \-66-+
| | \----- Gh_D02G0841 [Gossypium hirsutum] (53)
| |
| | /----- Ciclev10001811m [Citrus clementina] (7)
| | /-100+
/---------100--------+ | | \----- orange1.1g020210m [Citrus sinensis] (88)
| | \------100-----+
| | | /----- Neem_14357_f_2 [Azadirachta indica] (28)
| | \-100+
| | \----- Neem_36093_f_2 [Azadirachta indica] (78)
| |
| \------------------------------ evm.model.supercontig_36.191 [Carica papaya] (87)
|
| /--------------- Gh_A13G1525 [Gossypium hirsutum] (6)
| |
| | /----- Gh_D13G1856 [Gossypium hirsutum] (17)
| /------100-----+ /-100+
| | | | \----- Gorai.013G204300.1 [Gossypium raimondii] (86)
| | \-66-+
| | \---------- Cotton_A_22395_BGI-A2_v1.0 [Gossypium arboreum] (41)
| |
| | /----- Gh_A08G1880 [Gossypium hirsutum] (19)
| | /------100-----+
| /--64-+ | \----- Cotton_A_16840_BGI-A2_v1.0 [Gossypium arboreum] (77)
| | | |
/-99-+ | | | /---------- Gh_D11G2701 [Gossypium hirsutum] (31)
| | | | /-99-+ |
| | | | | | /-75-+ /----- Gh_A11G2386 [Gossypium hirsutum] (96)
| | | | | | | \-95-+
| | | | | \-100+ \----- Cotton_A_37514_BGI-A2_v1.0 [Gossypium arboreum] (98)
| | | \-100+ |
| | /-100+ | \--------------- Gorai.007G294800.1 [Gossypium raimondii] (72)
| | | | |
| | | | \------------------------- Thecc1EG026599t1 [Theobroma cacao] (73)
| | | |
| | | | /----- Neem_24331_f_1 [Azadirachta indica] (34)
| | | | /-100+
| | /-100+ | | \----- Neem_14212_f_1 [Azadirachta indica] (65)
| | | | \-----------100-----------+
| | | | \---------- orange1.1g036531m [Citrus sinensis] (90)
| | | |
/-100+ | | |----------------------------------------- Eucgr.B02000.1.p [Eucalyptus grandis] (10)
| | | | |
| | | | \----------------------------------------- Eucgr.H04468.1.p [Eucalyptus grandis] (42)
| | | |
| | \-100+ /----- orange1.1g043618m [Citrus sinensis] (12)
| | | /-100+
| | | | \----- Ciclev10026131m [Citrus clementina] (68)
| | | /-100+
| | | | | /----- Neem_1471_f_5 [Azadirachta indica] (64)
| | | | \-100+
--95-+ | | /-99-+ \----- Neem_23313_f_1 [Azadirachta indica] (85)
| | | | |
| | \-----------100-----------+ \--------------- evm.model.supercontig_55.64 [Carica papaya] (92)
| | |
| | \-------------------- Eucgr.H04738.1.p [Eucalyptus grandis] (89)
| |
| \-------------------------------------------------------- Eucgr.B00048.1.p [Eucalyptus grandis] (51)
|
| /----- XP_010535287.1 [Tarenaya hassleriana] (82)
\--------------------------100--------------------------+
\----- XP_010521172.1 [Tarenaya hassleriana] (95)
Subtree rooted at node 171:
/----- GSBRNA2T00073087001 [Brassica napus] (2)
/-99-+
| \----- XP_009110135.1 [Brassica rapa] (33)
/-100+
| | /----- GSBRNA2T00153148001 [Brassica napus] (47)
| \-100+
/-100+ \----- XP_013603073.1 [Brassica oleracea] (91)
| |
| | /----- RrC8589_p1 [Raphanus raphanistrum] (36)
/----88---+ \---100---+
| | \----- Rsa1.0_00133.1_g00010.1 [Raphanus sativus] (93)
| |
| \-------------------- Thhalv10009836m [Eutrema salsugineum] (23)
|
| /----- 335492 [Arabidopsis lyrata] (3)
/--52-+ /-100+
| | | \----- Araha.2296s0007.1.p [Arabidopsis halleri] (43)
| | /------99------+
| | | \---------- AT1G22490.1 [Arabidopsis thaliana] (80)
| | |
| | | /-------------------- Bostr.12659s0103.1.p [Boechera stricta] (30)
| \-100+ |
| | | /---------- Csa17g029420.1 [Camelina sativa] (49)
| | | |
| \-100+ /-100+ /----- Csa14g027690.1 [Camelina sativa] (76)
| | | \-100+
| | | \----- Csa03g026360.1 [Camelina sativa] (81)
| \-73-+
| | /----- Carubv10011476m [Capsella rubella] (55)
| \---100---+
| \----- Cagra.0114s0053.1.p [Capsella grandiflora] (79)
|
/-59-+ /----- XP_013584555.1 [Brassica oleracea] (13)
| | /-100+
| | | \----- GSBRNA2T00119510001 [Brassica napus] (44)
| | /-100+
| | | | /----- GSBRNA2T00015730001 [Brassica napus] (20)
| | | \-100+
| | /-100+ \----- XP_009123119.1 [Brassica rapa] (56)
| | | |
| | | | /----- Rsa1.0_00433.1_g00008.1 [Raphanus sativus] (22)
| | /-100+ \---100---+
| | | | \----- RrC23716_p1 [Raphanus raphanistrum] (97)
| | | |
| | /-50-+ \-------------------- 676753784 [Sisymbrium irio] (66)
| | | |
/-99-+ | | \------------------------- Tp1g19970 [Thellungiella parvula] (32)
| | | |
| | \--83-+ /----- Rsa1.0_00988.1_g00003.1 [Raphanus sativus] (18)
| | | /---100---+
| | | | \----- RrC6081_p1 [Raphanus raphanistrum] (46)
| | | |
| | \------100-----+ /----- XP_013596038.1 [Brassica oleracea] (25)
| | | /-100+
/-100+ | | | \----- GSBRNA2T00061885001 [Brassica napus] (38)
| | | \-100+
| | | | /----- XP_009103235.1 [Brassica rapa] (59)
| | | \-100+
| | | \----- GSBRNA2T00085942001 [Brassica napus] (110)
/-100+ | |
| | | \----------------------------------------- KFK44344.1 [Arabis alpina] (100)
| | |
| | \---------------------------------------------- AA39G00438 [Aethionema arabicum] (62)
/-100+ |
| | \--------------------------------------------------- (168)
| |
--96-+ \-------------------------------------------------------- AA31G00146 [Aethionema arabicum] (94)
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\------------------------------------------------------------- KFK41642.1 [Arabis alpina] (57)
Root part of tree:
/------------------------------------------------------------------ RrC13578_p1 [Raphanus raphanistrum] (1)
|
|------------------------------------------------------------------ Rsa1.0_00257.1_g00003.1 [Raphanus sativus] (24)
|
| /------------------------------ (171)
| |
| | /----- Csa16g034840.1 [Camelina sativa] (8)
| | /-97-+
| | | \----- Csa07g039230.1 [Camelina sativa] (15)
| | /-100+
| | | | /----- Csa07g021990.1 [Camelina sativa] (54)
| /-100-+ | \-100+
| | | /-100+ \----- Csa09g075680.1 [Camelina sativa] (99)
| | | | |
| | | | | /----- Carubv10020657m [Capsella rubella] (29)
| | | /-98-+ \---100---+
| | | | | \----- Cagra.4006s0007.1.p [Capsella grandiflora] (69)
| | | | |
| /-100+ \-100+ \-------------------- Bostr.10273s0131.1.p [Boechera stricta] (120)
| | | |
| | | | /----- AT1G72210.1 [Arabidopsis thaliana] (9)
| | | \--------100--------+
| /-70-+ | \----- Araha.10095s0001.1.p [Arabidopsis halleri] (75)
| | | |
| | | \------------------------------------ Thhalv10018867m [Eutrema salsugineum] (70)
+ | |
| | \----------------------------------------- 676751756 [Sisymbrium irio] (71)
| |
| | /----- XP_009105879.1 [Brassica rapa] (11)
| /-91-+ /-100+
| | | | \----- GSBRNA2T00102536001 [Brassica napus] (60)
| | | |
| | | /-100+ /----- GSBRNA2T00103287001 [Brassica napus] (26)
| | | | | |
| | | | \-97-+----- XP_013588246.1 [Brassica oleracea] (52)
| /-99-+ \--------------100-------------+ |
| | | | \----- GSBRNA2T00064294001 [Brassica napus] (74)
| | | |
| | | \--------------- Rsa1.0_00139.1_g00017.1 [Raphanus sativus] (21)
| | |
| | \--------------------------------------------------- Tp5g27300 [Thellungiella parvula] (83)
| |
| /-100+ /----- XP_013588773.1 [Brassica oleracea] (4)
| | | /-100+
| | | | \----- GSBRNA2T00096725001 [Brassica napus] (14)
| | | /-100+
| | | | | /----- XP_009104863.1 [Brassica rapa] (35)
| | | | \-100+
| | \-------------------100------------------+ \----- GSBRNA2T00099555001 [Brassica napus] (63)
| | |
\-100+ | /----- RrC7777_p1 [Raphanus raphanistrum] (58)
| \---100---+
| \----- Rsa1.0_00060.1_g00029.1 [Raphanus sativus] (61)
|
| /----- XP_013618510.1 [Brassica oleracea] (16)
| /-100+
| | \----- GSBRNA2T00137238001 [Brassica napus] (37)
\------------------------100-----------------------+
| /----- XP_009127909.1 [Brassica rapa] (48)
\-100+
\----- GSBRNA2T00116433001 [Brassica napus] (84)
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