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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Phylogenetic Tree for OGEM1228
| Phylogenetic tree for protein ? help Back to Top |
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Subtree rooted at node 159:
/----- GSBRNA2T00141113001 [Brassica napus] (3)
/-100+
| \----- XP_013623681.1 [Brassica oleracea] (22)
/-100+
| | /----- XP_009132024.1 [Brassica rapa] (23)
| \-97-+
/-100+ \----- GSBRNA2T00020997001 [Brassica napus] (78)
| |
| \--------------- RrC731_p2 [Raphanus raphanistrum] (93)
|
|-------------------- Tp6g20600 [Thellungiella parvula] (24)
/-99-+
| | /----- Rsa1.0_01744.1_g00002.1 [Raphanus sativus] (48)
| | /---100---+
| | | \----- RrC6527_p2 [Raphanus raphanistrum] (98)
| | |
| \-100+ /----- GSBRNA2T00133353001 [Brassica napus] (62)
| | /-100+
/-100+ | | \----- XP_013606735.1 [Brassica oleracea] (81)
| | \-100+
| | | /----- XP_009120398.1 [Brassica rapa] (66)
| | \-59-+
| | \----- GSBRNA2T00013558001 [Brassica napus] (97)
| |
| \------------------------- Thhalv10014270m [Eutrema salsugineum] (25)
|
| /----- Csa18g032080.1 [Camelina sativa] (17)
| /-51-+
/-100-+ | \----- Csa11g092630.1 [Camelina sativa] (18)
| | |
| | | /----- Cagra.0891s0087.1.p [Capsella grandiflora] (31)
| | /-89-+-100+
| | | | \----- Carubv10026903m [Capsella rubella] (52)
| | | |
| | /-84-+ \---------- Csa02g064550.1 [Camelina sativa] (50)
| | | |
/-100+ | | \--------------- Bostr.26833s0356.1.p [Boechera stricta] (74)
| | | |
| | \---100---+ /----- 496013 [Arabidopsis lyrata] (53)
| | | /-92-+
| | | | \----- Araha.2135s0003.1.p [Arabidopsis halleri] (80)
/-100+ | \----87---+
| | | \---------- AT5G58900.1 [Arabidopsis thaliana] (89)
| | |
| | \------------------------------------ KFK27418.1 [Arabis alpina] (77)
/-100+ |
| | \----------------------------------------- AA4G00041 [Aethionema arabicum] (94)
| |
| | /----- XP_010535414.1 [Tarenaya hassleriana] (9)
/-73-+ \-------------------100------------------+
| | \----- XP_010541440.1 [Tarenaya hassleriana] (56)
| |
| \--------------------------------------------------- evm.model.supercontig_112.58 [Carica papaya] (54)
|
| /----- Ciclev10028910m [Citrus clementina] (19)
| /-100+
/-55-+ | \----- orange1.1g021816m [Citrus sinensis] (69)
| | /---100---+
| | | | /----- Neem_25377_f_3 [Azadirachta indica] (41)
| | | \-100+
| | | \----- Neem_5773_f_5 [Azadirachta indica] (51)
| | |
| | | /----- Gh_D05G0887 [Gossypium hirsutum] (28)
| \-----------------99----------------+ /-96-+
--100+ | | \----- Gorai.009G093700.1 [Gossypium raimondii] (39)
| | /-100+
| | | | /----- Cotton_A_12918_BGI-A2_v1.0 [Gossypium arboreum] (33)
| | | \-100+
| \-100+ \----- Gh_A05G0757 [Gossypium hirsutum] (87)
| |
| \--------------- Thecc1EG041672t1 [Theobroma cacao] (75)
|
\------------------------------------------------------------- Eucgr.J01940.1.p [Eucalyptus grandis] (92)
Root part of tree:
/------------------------------------------------------------------ XP_010529770.1 [Tarenaya hassleriana] (1)
|
|------------------------------------------------------------------ XP_010553252.1 [Tarenaya hassleriana] (83)
|
| /------- Carubv10023736m [Capsella rubella] (2)
| /-----100----+
| | \------- Cagra.0090s0025.1.p [Capsella grandiflora] (71)
| |
| | /------------- Csa05g015460.1 [Camelina sativa] (12)
| | |
| /------------97-----------+--100-+ /------- Csa06g040830.1 [Camelina sativa] (59)
| | | \--55-+
| | | \------- Csa04g051770.1 [Camelina sativa] (72)
| | |
| | \-------------------- Bostr.23794s0264.1.p [Boechera stricta] (35)
| |
| | /------------- Rsa1.0_05868.1_g00002.1 [Raphanus sativus] (4)
| | |
| | /--100-+ /------- RrC2547_p1 [Raphanus raphanistrum] (44)
| | | \--84-+
| | | \------- Rsa1.0_03192.1_g00003.1 [Raphanus sativus] (64)
| | |
| | /-----100----+ /------- XP_013633647.1 [Brassica oleracea] (27)
| | | | /-100-+
| | | | | \------- GSBRNA2T00041005001 [Brassica napus] (45)
| | | \--100-+
| | | | /------- XP_009143425.1 [Brassica rapa] (37)
| | | \-100-+
| | | \------- GSBRNA2T00116915001 [Brassica napus] (60)
| | |
| | | /------- Tp4g20410 [Thellungiella parvula] (8)
| | |------------72-----------+
| | | \------- Thhalv10017008m [Eutrema salsugineum] (30)
| | |
| | | /------- GSBRNA2T00155303001 [Brassica napus] (13)
| | /--55--+ /-100-+
| | | | | \------- XP_013631946.1 [Brassica oleracea] (79)
| | | | /--100-+
+ /-----89-----+ | | | | /------- GSBRNA2T00005396001 [Brassica napus] (38)
| | | | | | \-100-+
| | | | | /--57-+ \------- XP_009141719.1 [Brassica rapa] (46)
| | | | | | |
| | | | | | | /------- Rsa1.0_00328.1_g00009.1 [Raphanus sativus] (29)
| | | | |--56--+ \-----77-----+
| | | | | | \------- RrC18072_p1 [Raphanus raphanistrum] (91)
| | |--61-+ | |
| | | | | \-------------------------- 676781480 [Sisymbrium irio] (68)
| | | | |
| | | | \--------------------------------- AA68G00014 [Aethionema arabicum] (47)
| | | |
| | | | /------- RrC2874_p5 [Raphanus raphanistrum] (7)
| | | | /-----100----+
| | | | | \------- Rsa1.0_00574.1_g00004.1 [Raphanus sativus] (36)
| | | | |
| | | \--------100--------+ /------------- XP_009133230.1 [Brassica rapa] (20)
| | | | |
| | | | |------------- GSBRNA2T00124880001 [Brassica napus] (32)
| | | \--100-+
| | | | /------- GSBRNA2T00079177001 [Brassica napus] (55)
| | | \-100-+
| | | \------- XP_013622554.1 [Brassica oleracea] (90)
| | |
| | | /------- 482816 [Arabidopsis lyrata] (43)
| | | |
| | | /-100-+------- Araha.42201s0001.1.p [Arabidopsis halleri] (73)
| | | | |
| | \---------------100--------------+ \------- Araha.17955s0001.1.p [Arabidopsis halleri] (96)
| | |
| | \------------- AT2G38090.1 [Arabidopsis thaliana] (49)
| |
| | /-------------------- (159)
| | |
| | | /------- Neem_29_f_3 [Azadirachta indica] (14)
| | /-100-+ /-100-+
| | | | | \------- Neem_23904_f_2 [Azadirachta indica] (15)
\--100-+ | \--100-+
| | \------------- Ciclev10032309m [Citrus clementina] (70)
| /--72--+
| | |-------------------------- evm.model.supercontig_1130.1 [Carica papaya] (11)
| | |
| | \-------------------------- Eucgr.B02800.1.p [Eucalyptus grandis] (16)
| /-----99-----+
| | | /------- Ciclev10012285m [Citrus clementina] (26)
| | | /-100-+
| | | | \------- orange1.1g021756m [Citrus sinensis] (100)
| | \--------100--------+
| | | /------- Neem_10120_f_1 [Azadirachta indica] (82)
| | \-100-+
| | \------- Neem_30941_f_1 [Azadirachta indica] (85)
| |
| | /------------- Gh_Sca069014G01 [Gossypium hirsutum] (5)
| | |
| | | /------- Gorai.007G378300.1 [Gossypium raimondii] (10)
| | |--58-+
| | /-----100----+ \------- Gh_D11G3323 [Gossypium hirsutum] (57)
| | | |
| | | | /------- Cotton_A_05573_BGI-A2_v1.0 [Gossypium arboreum] (34)
| | | \--95-+
| /--99--+ | \------- Gh_A11G2937 [Gossypium hirsutum] (76)
| | | |
| | | /--67--+ /------- Gh_D01G2210 [Gossypium hirsutum] (6)
| | | | | /--83-+
| | | | | | \------- Gorai.002G261600.1 [Gossypium raimondii] (65)
| | | | | /--100-+
| | | | | | | /------- Gh_A01G1949 [Gossypium hirsutum] (88)
| | | | | | \--51-+
| | | | \--74-+ \------- Cotton_A_00334_BGI-A2_v1.0 [Gossypium arboreum] (95)
| | | /--61--+ |
| | | | | \-------------------- Thecc1EG021750t1 [Theobroma cacao] (42)
| | | | |
| | | | | /------- Cotton_A_39278_BGI-A2_v1.0 [Gossypium arboreum] (63)
| | | | | /-100-+
\--89-+ | | | | \------- Gh_A04G0758 [Gossypium hirsutum] (84)
| | | \--------100--------+
| \--97-+ | /------- Gh_D04G1244 [Gossypium hirsutum] (67)
| | \--98-+
| | \------- Gorai.012G112000.1 [Gossypium raimondii] (99)
| |
| | /------- Gorai.006G180900.1 [Gossypium raimondii] (40)
| | /--91-+
| | | \------- Gh_D09G1543 [Gossypium hirsutum] (58)
| \------------100-----------+
| | /------- Gh_A09G1525 [Gossypium hirsutum] (61)
| \-100-+
| \------- Cotton_A_02483_BGI-A2_v1.0 [Gossypium arboreum] (86)
|
\----------------------------------------------------- XP_010543227.1 [Tarenaya hassleriana] (21)
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