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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Phylogenetic Tree for OGEM1256
| Phylogenetic tree for protein ? help Back to Top |
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Subtree rooted at node 131:
/----- GSBRNA2T00032165001 [Brassica napus] (2)
/-100+
| \----- XP_013584623.1 [Brassica oleracea] (33)
/-100+
| | /----- XP_009145259.1 [Brassica rapa] (93)
| \-100+
/-100-+ \----- GSBRNA2T00048439001 [Brassica napus] (97)
| |
/----76---+ \--------------- Rsa1.0_03095.1_g00001.1 [Raphanus sativus] (19)
| |
| \--------------------- 676758752 [Sisymbrium irio] (94)
|
| /----- Rsa1.0_08312.1_g00001.1 [Raphanus sativus] (3)
| /---------100--------+
/-100+ | \----- RrC4475_p1 [Raphanus raphanistrum] (36)
| | |
| | | /---------- GSBRNA2T00158438001 [Brassica napus] (12)
| | | |
| | | /-59-+ /----- GSBRNA2T00158445001 [Brassica napus] (53)
| \-100+ | \-100+
| | | \----- XP_013623226.1 [Brassica oleracea] (76)
| | /-100-+
| | | | /----- GSBRNA2T00154829001 [Brassica napus] (57)
| | | \---100---+
| \-66-+ \----- XP_009135829.1 [Brassica rapa] (64)
| |
/-69-+ \--------------------- GSBRNA2T00158442001 [Brassica napus] (24)
| |
| | /----- Rsa1.0_00052.1_g00007.1 [Raphanus sativus] (4)
| | /------100------+
| | | \----- RrC3419_p2 [Raphanus raphanistrum] (20)
| | |
| | | /----- XP_009108632.1 [Brassica rapa] (11)
| | /-100+ /-97-+
| | | | | \----- GSBRNA2T00056228001 [Brassica napus] (22)
/-76-+ | | | /-70-+
| | | | | | \---------- GSBRNA2T00085879001 [Brassica napus] (85)
| | | | \-100-+
| | \----99---+ | /----- XP_013588127.1 [Brassica oleracea] (13)
| | | \---100---+
| | | \----- GSBRNA2T00085882001 [Brassica napus] (34)
| | |
| | \-------------------------- Tp3g20530 [Thellungiella parvula] (61)
| |
| \----------------------------------------- Thhalv10020829m [Eutrema salsugineum] (35)
|
| /----- Araha.5588s0001.1.p [Arabidopsis halleri] (5)
/-100-+ /------100------+
| | | \----- 479794 [Arabidopsis lyrata] (95)
| | |
| | | /---------- Csa15g040580.1 [Camelina sativa] (18)
| | /-99-+ |
| | | | /-100+ /----- Csa01g026120.1 [Camelina sativa] (81)
| | | | | \-100+
| | | \-100-+ \----- Csa19g032090.1 [Camelina sativa] (82)
/-100+ | /-100+ |
| | | | | \--------------- Carubv10013808m [Capsella rubella] (26)
| | | | |
| | \------100-----+ \-------------------------- Bostr.19424s0375.1.p [Boechera stricta] (55)
| | |
/-99-+ | \------------------------------- AT3G22830.1 [Arabidopsis thaliana] (25)
| | |
| | \---------------------------------------------------- AA17G00081 [Aethionema arabicum] (40)
--95-+ |
| \--------------------------------------------------------- XP_010525224.1 [Tarenaya hassleriana] (23)
|
\-------------------------------------------------------------- XP_010556876.1 [Tarenaya hassleriana] (62)
Subtree rooted at node 167:
/---------- (131)
|
/---------66---------+ /----- Eucgr.H03412.1.p [Eucalyptus grandis] (43)
| \-100+
| \----- EcC042361.20 [Eucalyptus camaldulensis] (48)
|
| /----- Gh_A09G2227 [Gossypium hirsutum] (9)
| /-96-+
| | \----- Cotton_A_16493_BGI-A2_v1.0 [Gossypium arboreum] (86)
| /----100---+
| | | /----- Gh_D09G2120 [Gossypium hirsutum] (15)
| | \-100+
| | \----- Gorai.006G242400.1 [Gossypium raimondii] (37)
| |
| | /----- Gh_A10G1028 [Gossypium hirsutum] (45)
| /-100+ /-100+
| | | | \----- Cotton_A_37899_BGI-A2_v1.0 [Gossypium arboreum] (59)
/-81-+ | | /-100+
| | | | | | /----- Gh_D10G1499 [Gossypium hirsutum] (68)
| | | | | \-100+
| | | \-100-+ \----- Gorai.011G168400.1 [Gossypium raimondii] (72)
| |-60-+ |
| | | \--------------- Thecc1EG020700t1 [Theobroma cacao] (50)
| | |
| | | /----- orange1.1g018107m [Citrus sinensis] (31)
| | | /-100+
/-86-+ | | | \----- Ciclev10006902m [Citrus clementina] (58)
| | | \------100------+
| | | | /----- Neem_22125_f_2 [Azadirachta indica] (44)
| | | \-100+
| | | \----- Neem_4529_f_2 [Azadirachta indica] (63)
| | |
/-86-+ | \------------------------------- evm.model.supercontig_44.122 [Carica papaya] (80)
| | |
| | \------------------------------------ EcC033061.10 [Eucalyptus camaldulensis] (54)
| |
| | /----- Eucgr.K03325.1.p [Eucalyptus grandis] (65)
| \----------------100----------------+
/--66-+ \----- EcC060749.10 [Eucalyptus camaldulensis] (74)
| |
| | /----- orange1.1g017694m [Citrus sinensis] (30)
| | /-100+
| | | \----- Ciclev10020718m [Citrus clementina] (39)
| \----------------100----------------+
| | /----- Neem_22908_f_1 [Azadirachta indica] (56)
| \-100+
| \----- Neem_524_f_1 [Azadirachta indica] (83)
|
| /----- Gh_A12G0018 [Gossypium hirsutum] (10)
| /-97-+
| | \----- Cotton_A_22025_BGI-A2_v1.0 [Gossypium arboreum] (38)
| /-100+
/-51-+ | \---------- Gh_D12G0019 [Gossypium hirsutum] (70)
| | |
| | /--89-+ /----- Cotton_A_08195_BGI-A2_v1.0 [Gossypium arboreum] (42)
| | | | /-100+
| | | | | \----- Gh_A11G1149 [Gossypium hirsutum] (89)
| | | \-100+
| | | | /----- Gorai.007G139600.1 [Gossypium raimondii] (88)
| | | \-100+
| | /-91-+ \----- Gh_D11G1303 [Gossypium hirsutum] (92)
| | | |
/-95-+ | | | /----- Gh_A08G0587 [Gossypium hirsutum] (46)
| | | | | /-100+
| | | | | | \----- Cotton_A_16993_BGI-A2_v1.0 [Gossypium arboreum] (49)
| | \------------99-----------+ \----100---+
| | | | /----- Gh_D08G0680 [Gossypium hirsutum] (47)
| | | \-100+
--98-+ | | \----- Gorai.004G076900.1 [Gossypium raimondii] (91)
| | |
| | \-------------------------- Thecc1EG004275t1 [Theobroma cacao] (41)
| |
| \--------------------------------------------------------- evm.model.supercontig_52.116 [Carica papaya] (32)
|
\-------------------------------------------------------------- XP_010545101.1 [Tarenaya hassleriana] (29)
Subtree rooted at node 191:
/----- (167)
/------------98-----------+
| \----- AA18G00096 [Aethionema arabicum] (60)
|
| /--------------- Cagra.1043s0019.1.p [Capsella grandiflora] (16)
| |
| | /----- Csa09g058950.1 [Camelina sativa] (17)
| /-100-+ /-97-+
/-88-+ | | | \----- Csa04g037730.1 [Camelina sativa] (21)
| | | \-100+
| | /-100+ \---------- Csa06g026120.1 [Camelina sativa] (52)
| | | |
| | | \--------------------- Bostr.6864s0056.1.p [Boechera stricta] (73)
| | |
/-95-+ \-100+ /----- AT3G51910.1 [Arabidopsis thaliana] (27)
| | | /-100+
| | | | \----- Araha.5904s0009.1.p [Arabidopsis halleri] (78)
| | \------100------+
/-91-+ | \---------- 485548 [Arabidopsis lyrata] (66)
| | |
| | \------------------------------------ KFK34438.1 [Arabis alpina] (87)
/--96-+ |
| | \----------------------------------------- Thhalv10011051m [Eutrema salsugineum] (69)
| |
| \---------------------------------------------- Tp5g10360 [Thellungiella parvula] (77)
|
| /---------- XP_009139495.1 [Brassica rapa] (28)
/-98-+ |
| | /-100+ /----- XP_013631217.1 [Brassica oleracea] (71)
| | | \-100+
| | /--93-+ \----- GSBRNA2T00100979001 [Brassica napus] (75)
| | | |
| \--------------100-------------+ \--------------- RrC14908_p1 [Raphanus raphanistrum] (96)
| |
| \--------------------- 676791056 [Sisymbrium irio] (79)
|
/-100+ /----- XP_013593957.1 [Brassica oleracea] (7)
| | /-100+
| | | \----- GSBRNA2T00041793001 [Brassica napus] (90)
| | /-100+
| | | \---------- GSBRNA2T00151270001 [Brassica napus] (84)
| |--------------------98-------------------+
| | \--------------- Rsa1.0_00347.1_g00007.1 [Raphanus sativus] (67)
--79-+ |
| | /----- RrC2679_p2 [Raphanus raphanistrum] (8)
| \------------------------100------------------------+
| \----- Rsa1.0_00347.1_g00006.1 [Raphanus sativus] (14)
|
| /----- XP_013596160.1 [Brassica oleracea] (6)
\---------------------------97---------------------------+
\----- XP_013615677.1 [Brassica oleracea] (99)
Root part of tree:
/------------------------------------------------------------------- GSBRNA2T00151271001 [Brassica napus] (1)
|
|------------------------------------------------------------------- XP_009137089.1 [Brassica rapa] (98)
+
| /--------------------------------- (191)
\----------------91---------------+
\--------------------------------- XP_009136642.1 [Brassica rapa] (51)
|
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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