Subtree rooted at node 139:

                                                                    /----- orange1.1g024344m [Citrus sinensis]                    (3)
                                                               /-100+                 
                                                               |    \----- Ciclev10032412m [Citrus clementina]                    (13)
                                               /------100------+                      
                                               |               |    /----- Neem_12129_f_1 [Azadirachta indica]                    (22)
                                               |               \-100+                 
                                               |                    \----- Neem_6557_f_3 [Azadirachta indica]                     (52)
                                               |                                      
                                               |                    /----- Gorai.005G188700.1 [Gossypium raimondii]               (24)
                                               |               /-99-+                 
                                               |               |    \----- Gh_D02G1714 [Gossypium hirsutum]                       (60)
                                               |          /-100+                      
                     /-----------100-----------+          |    |    /----- Cotton_A_19301_BGI-A2_v1.0 [Gossypium arboreum]        (29)
                     |                         |          |    \-57-+                 
                     |                         |          |         \----- Gh_A03G1273 [Gossypium hirsutum]                       (51)
                     |                         |    /-100-+                           
                     |                         |    |     |         /----- Gorai.008G053100.1 [Gossypium raimondii]               (28)
                     |                         |    |     |    /-98-+                 
                     |                         |    |     |    |    \----- Gh_D12G0475 [Gossypium hirsutum]                       (62)
                     |                         |    |     \-100+                      
                     |                         \-100+          |    /----- Cotton_A_21315_BGI-A2_v1.0 [Gossypium arboreum]        (32)
                     |                              |          \-100+                 
                     |                              |               \----- Gh_A12G2534 [Gossypium hirsutum]                       (58)
                     |                              |                                 
                     |                              \--------------------- evm.model.supercontig_5.303 [Carica papaya]            (68)
                     |                                                                
                     |                                              /----- XP_010553649.1 [Tarenaya hassleriana]                  (4)
                /-51-+     /-------------------100------------------+                 
                |    |     |                                        \----- XP_010548267.1 [Tarenaya hassleriana]                  (56)
                |    |     |                                                          
                |    |     |              /------------------------------- KFK43332.1 [Arabis alpina]                             (7)
                |    |     |              |                                           
                |    |     |              |                         /----- Rsa1.0_00605.1_g00002.1 [Raphanus sativus]             (21)
                |    |     |              |                    /-100+                 
                |    |     |              |                    |    \----- RrC241_p8 [Raphanus raphanistrum]                      (53)
                |    |     |              |               /-66-+                      
                |    |     |              |               |    |    /----- GSBRNA2T00156091001 [Brassica napus]                   (38)
                |    |     |         /-98-+               |    \-100+                 
                |    |     |         |    |         /-100-+         \----- XP_009148369.1 [Brassica rapa]                         (66)
                |    |     |         |    |         |     |                           
                |    |     |         |    |         |     |         /----- XP_013585673.1 [Brassica oleracea]                     (40)
                |    |     |         |    |    /-92-+     \----98---+                 
                |    \-100-+         |    |    |    |               \----- GSBRNA2T00065023001 [Brassica napus]                   (59)
                |          |    /-100+    |    |    |                                 
                |          |    |    |    \-73-+    \--------------------- Tp1g09050 [Thellungiella parvula]                      (77)
                |          |    |    |         |                                      
                |          |    |    |         \-------------------------- 676723328 [Sisymbrium irio]                            (34)
                |          |    |    |                                                
                |          |    |    \------------------------------------ Thhalv10008474m [Eutrema salsugineum]                  (72)
                |          |    |                                                     
                |          |    |                                   /----- Carubv10020803m [Capsella rubella]                     (14)
                |          |    |                         /---100---+                 
           /-100+          |    |                         |         \----- Cagra.4331s0005.1.p [Capsella grandiflora]             (23)
           |    |          |    |                         |                           
           |    |          |    |                   /-100-+         /----- Csa07g017420.1 [Camelina sativa]                       (47)
           |    |          |    |                   |     |    /-89-+                 
           |    |          |    |                   |     |    |    \----- Csa16g017820.1 [Camelina sativa]                       (55)
           |    |          \-85-+                   |     \-100+                      
           |    |               |              /-57-+          \---------- Csa12g044460.1 [Camelina sativa]                       (50)
           |    |               |              |    |                                 
           |    |               |              |    |               /----- 893615 [Arabidopsis lyrata]                            (20)
           |    |               |         /-100+    \------100------+                 
           |    |               |         |    |                    \----- AT1G59640.2 [Arabidopsis thaliana]                     (57)
           |    |               |         |    |                                      
           |    |               |         |    \-------------------------- Bostr.10040s0284.1.p [Boechera stricta]                (69)
           |    |               |    /-100+                                           
           |    |               |    |    |                         /----- 676778830 [Sisymbrium irio]                            (27)
           |    |               |    |    |                    /-100+                 
           |    |               |    |    |                    |    \----- Tp2g04920 [Thellungiella parvula]                      (61)
           |    |               |    |    \---------100--------+                      
           |    |               \-100+                         |    /----- Thhalv10023982m [Eutrema salsugineum]                  (35)
      --100+    |                    |                         \-91-+                 
           |    |                    |                              \----- Thhalv10023643m [Eutrema salsugineum]                  (46)
           |    |                    |                                                
           |    |                    \------------------------------------ AA53G00440 [Aethionema arabicum]                       (65)
           |    |                                                                     
           |    |                                                   /----- Eucgr.B03392.1.p [Eucalyptus grandis]                  (17)
           |    \------------------------100------------------------+                 
           |                                                        \----- EcC034723.20 [Eucalyptus camaldulensis]                (18)
           |                                                                          
           |                                                        /----- Eucgr.K02908.1.p [Eucalyptus grandis]                  (5)
           |                                   /---------88---------+                 
           |                                   |                    \----- Eucgr.B00385.1.p [Eucalyptus grandis]                  (16)
           |                                   |                                      
           |                                   |                    /----- Thecc1EG045748t1 [Theobroma cacao]                     (6)
           |                                   |          /---100---+                 
           |                                   |          |         \----- Thecc1EG045701t1 [Theobroma cacao]                     (25)
           |                                   |          |                           
           |                                   |    /-100-+         /----- Gh_A11G2978 [Gossypium hirsutum]                       (48)
           \----------------100----------------+    |     |    /-93-+                 
                                               |    |     |    |    \----- Cotton_A_09193_BGI-A2_v1.0 [Gossypium arboreum]        (76)
                                               |    |     \-100+                      
                                               |    |          |    /----- Gorai.007G034400.1 [Gossypium raimondii]               (63)
                                               |    |          \-100+                 
                                               |    |               \----- Gh_D11G0306 [Gossypium hirsutum]                       (78)
                                               |    |                                 
                                               \-93-+               /----- Neem_19110_f_1 [Azadirachta indica]                    (8)
                                                    |          /-100+                 
                                                    |          |    \----- Neem_39244_f_1 [Azadirachta indica]                    (49)
                                                    |----100---+                      
                                                    |          |    /----- orange1.1g023847m [Citrus sinensis]                    (10)
                                                    |          \-100+                 
                                                    |               \----- Ciclev10021606m [Citrus clementina]                    (33)
                                                    |                                 
                                                    \--------------------- evm.model.supercontig_203.5 [Carica papaya]            (30)
                                                                                      
      Root part of tree:

      /------------------------------------------------------------------- Carubv10017822m [Capsella rubella]                     (1)
      |                                                                               
      |------------------------------------------------------------------- Cagra.13768s0007.1.p [Capsella grandiflora]            (36)
      |                                                                               
      |                                                 /----------------- Tp2g25790 [Thellungiella parvula]                      (2)
      |                                                 |                             
      |                                                 |          /------ XP_013608995.1 [Brassica oleracea]                     (41)
      |                                      /----99----+          |                  
      |                                      |          |     /-89-+------ GSBRNA2T00094642001 [Brassica napus]                   (67)
      |                                      |          |     |    |                  
      |                                      |          \-100-+    \------ XP_009112028.1 [Brassica rapa]                         (74)
      |                                      |                |                       
      |                                      |                \----------- GSBRNA2T00146197001 [Brassica napus]                   (43)
      |                                      |                                        
      |                                      |                     /------ KFK27990.1 [Arabis alpina]                             (9)
      |                                 /-57-+                     |                  
      |                                 |    |                     |------ 496441 [Arabidopsis lyrata]                            (54)
      |                                 |    |     /-------99------+                  
      |                                 |    |     |               |------ Araha.4414s0003.1.p [Arabidopsis halleri]              (70)
      |                                 |    |     |               |                  
      |                                 |    |     |               \------ AT5G62610.1 [Arabidopsis thaliana]                     (75)
      |                                 |    |     |                                  
      |                                 |    \--97-+               /------ Carubv10026916m [Capsella rubella]                     (37)
      +                           /--97-+          |          /-100+                  
      |                           |     |          |          |    \------ Cagra.4003s0049.1.p [Capsella grandiflora]             (71)
      |                           |     |          |    /--97-+                       
      |                           |     |          |    |     \----------- Bostr.0568s0546.1.p [Boechera stricta]                 (39)
      |                           |     |          \-98-+                             
      |                     /-100-+     |               \----------------- Csa11g099450.1 [Camelina sativa]                       (42)
      |                     |     |     |                                             
      |                     |     |     \--------------------------------- Thhalv10004734m [Eutrema salsugineum]                  (73)
      |                     |     |                                                   
      |                     |     \--------------------------------------- AA5G00056 [Aethionema arabicum]                        (19)
      |                /-100+                                                         
      |                |    |                                      /------ (139)
      |                |    |                                 /-97-+                  
      |                |    |                                 |    \------ XP_010547798.1 [Tarenaya hassleriana]                  (64)
      |          /--98-+    \---------------100---------------+                       
      |          |     |                                      \----------- XP_010546046.1 [Tarenaya hassleriana]                  (44)
      |          |     |                                                              
      |          |     |                                           /------ Araha.2719s0004.1.p [Arabidopsis halleri]              (12)
      |     /-99-+     \--------------------100--------------------+                  
      |     |    |                                                 \------ 347878 [Arabidopsis lyrata]                            (26)
      |     |    |                                                                    
      |     |    \-------------------------------------------------------- Bostr.18473s0167.1.p [Boechera stricta]                (45)
      \-100-+                                                                         
            |                                                 /----------- Csa06g021460.1 [Camelina sativa]                       (11)
            |                                                 |                       
            \-----------------------100-----------------------+    /------ Csa09g048300.1 [Camelina sativa]                       (15)
                                                              \-100+                  
                                                                   \------ Csa04g030770.1 [Camelina sativa]                       (31)