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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Phylogenetic Tree for OGEM1952
| Phylogenetic tree for protein ? help Back to Top |
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Subtree rooted at node 131:
/----- XP_013583788.1 [Brassica oleracea] (2)
/-57-+
| \----- GSBRNA2T00008967001 [Brassica napus] (74)
/-58-+
| | /----- XP_013615044.1 [Brassica oleracea] (42)
| \-100+
| \----- XP_013639182.1 [Brassica oleracea] (68)
/--99-+
| |--------------- XP_009148559.1 [Brassica rapa] (5)
| |
/-100+ \--------------- GSBRNA2T00105401001 [Brassica napus] (27)
| |
| | /----- Rsa1.0_00419.1_g00002.1 [Raphanus sativus] (18)
/-50-+ \------100------+
| | \----- RrC1987_p2 [Raphanus raphanistrum] (48)
| |
| \-------------------------- 676755560 [Sisymbrium irio] (15)
/-100+
| | /--------------------- Tp1g11440 [Thellungiella parvula] (3)
| | |
| | | /----- RrC2403_p2 [Raphanus raphanistrum] (4)
| \---100---+ /---100---+
| | | \----- Rsa1.0_00020.1_g00015.1 [Raphanus sativus] (60)
| | |
| \-100-+ /----- GSBRNA2T00015245001 [Brassica napus] (8)
/-100+ | /-100+
| | | | \----- XP_009110613.1 [Brassica rapa] (71)
| | \-100+
| | | /----- XP_013604461.1 [Brassica oleracea] (38)
| | \-100+
| | \----- GSBRNA2T00057047001 [Brassica napus] (40)
| |
| \------------------------------------ Thhalv10007566m [Eutrema salsugineum] (81)
/------100------+
| | /----- Araha.52989s0002.1.p [Arabidopsis halleri] (10)
| | /-91-+
| | | \----- 879559 [Arabidopsis lyrata] (11)
| | /-99-+
| | | \---------- AT1G12860.1 [Arabidopsis thaliana] (52)
| | /--86-+
| | | \--------------- Bostr.13671s0164.1.p [Boechera stricta] (19)
| \--------100--------+
| | /----- Cagra.0568s0207.1.p [Capsella grandiflora] (31)
| \------100------+
| \----- Carubv10009081m [Capsella rubella] (58)
|
| /----- GSBRNA2T00040443001 [Brassica napus] (16)
| /-100+
| | \----- XP_013613372.1 [Brassica oleracea] (35)
| /-100+
| | | /----- XP_009129484.1 [Brassica rapa] (43)
| | \-100+
| | \----- GSBRNA2T00092171001 [Brassica napus] (57)
| /-100-+
| | | /----- XP_009152022.1 [Brassica rapa] (17)
| | | /-100+
| | | | \----- XP_013597306.1 [Brassica oleracea] (73)
| | \-99-+
| /-89-+ | /----- Rsa1.0_01883.1_g00003.1 [Raphanus sativus] (49)
| | | \-100+
| | | \----- RrC1984_p3 [Raphanus raphanistrum] (67)
| /-81-+ |
| | | \--------------------- Tp2g15870 [Thellungiella parvula] (56)
/-95-+ | |
| | | \-------------------------- 676759750 [Sisymbrium irio] (61)
| | /-66-+
| | | | /----- XP_013606376.1 [Brassica oleracea] (22)
| | | | /-100+
| | | | | \----- XP_009121430.1 [Brassica rapa] (23)
| | | \---------100--------+
| | /-99-+ | /----- RrC2891_p2 [Raphanus raphanistrum] (26)
| | | | \-100+
| | | | \----- Rsa1.0_00694.1_g00012.1 [Raphanus sativus] (64)
| | | |
| | | \------------------------------------ Thhalv10004059m [Eutrema salsugineum] (24)
| | |
| | | /----- Csa06g006530.1 [Camelina sativa] (28)
| | | /-95-+
| | | | \----- Csa09g011380.1 [Camelina sativa] (39)
| | /-100+ /-100+
| | | | | \---------- Csa04g012360.1 [Camelina sativa] (34)
| | | | /-100-+
--100+ | | | | | /----- Cagra.23157s0001.1.p [Capsella grandiflora] (36)
| | | | | \----56---+
| | | | /-95-+ \----- Carubv10017096m [Capsella rubella] (54)
| | | | | |
| | | | | \--------------------- Bostr.0556s0344.1.p [Boechera stricta] (47)
| | /--86-+ \------100-----+
| | | | | /---------- AT3G26744.1 [Arabidopsis thaliana] (62)
| | | | | |
| | | | \------100------+ /----- 484449 [Arabidopsis lyrata] (72)
| | | | \-100+
| | | | \----- Araha.13387s0004.1.p [Arabidopsis halleri] (82)
| \-100+ |
| | | /----- RrC5306_p2 [Raphanus raphanistrum] (41)
| | \-------------------100------------------+
| | \----- Rsa1.0_04413.1_g00003.1 [Raphanus sativus] (44)
| |
| \---------------------------------------------------- AA53G00886 [Aethionema arabicum] (32)
|
| /----- XP_010528979.1 [Tarenaya hassleriana] (33)
\---------------------------100--------------------------+
\----- XP_010554134.1 [Tarenaya hassleriana] (63)
Subtree rooted at node 156:
/----- (131)
/----------------------100---------------------+
| \----- evm.model.supercontig_70.77 [Carica papaya] (51)
|
| /----- orange1.1g047004m [Citrus sinensis] (9)
| /-100+
| | \----- Ciclev10033497m [Citrus clementina] (30)
| /-----------100-----------+
| | | /----- Neem_35293_f_2 [Azadirachta indica] (14)
| | \-100+
| | \----- Neem_11185_f_2 [Azadirachta indica] (69)
| |
| | /----- Gh_A11G0357 [Gossypium hirsutum] (12)
| | /-57-+
| | | \----- Cotton_A_01954_BGI-A2_v1.0 [Gossypium arboreum] (55)
| | /-100+
| | | | /----- Gh_D11G0415 [Gossypium hirsutum] (66)
| | | \-100+
/-100+ | | \----- Gorai.007G044800.1 [Gossypium raimondii] (80)
| | /-100+ /--99-+
| | | | | | /----- Gorai.003G116300.1 [Gossypium raimondii] (46)
| | | | | | /-95-+
| | | | | | | \----- Gh_D03G1047 [Gossypium hirsutum] (78)
| | | | | \-100+
| | | | /-100+ | /----- Gh_A03G0490 [Gossypium hirsutum] (70)
| | | | | | \-100+
| | | | | | \----- Cotton_A_28479_BGI-A2_v1.0 [Gossypium arboreum] (76)
| | /-99-+ | /-100+ |
| | | | | | | \--------------------- Thecc1EG014741t1 [Theobroma cacao] (29)
| | | | | | |
| | | | \-91-+ \-------------------------- XP_010536585.1 [Tarenaya hassleriana] (59)
/-95-+ | | | |
| | | | | \------------------------------- evm.model.supercontig_1024.1 [Carica papaya] (45)
| | | | |
| | \-100-+ | /----- Eucgr.G01938.1.p [Eucalyptus grandis] (20)
| | | \----------------100----------------+
| | | \----- EcC052705.10 [Eucalyptus camaldulensis] (79)
| | |
| | | /---------- Neem_8767_f_1 [Azadirachta indica] (25)
| | | |
| | \----------------100----------------+ /----- Ciclev10015052m [Citrus clementina] (53)
--100+ | \-100+
| | \----- orange1.1g011370m [Citrus sinensis] (75)
| |
| \--------------------------------------------------------- Thecc1EG017336t1 [Theobroma cacao] (7)
|
| /----- Gh_A11G0588 [Gossypium hirsutum] (6)
| /-100+
| | \----- Cotton_A_09442_BGI-A2_v1.0 [Gossypium arboreum] (21)
| |
\------------------------100------------------------+---------- Gorai.007G072600.1 [Gossypium raimondii] (13)
|
\---------- Gh_D11G0675 [Gossypium hirsutum] (65)
Root part of tree:
/------------------------------------------------------------------- Cotton_A_22712_BGI-A2_v1.0 [Gossypium arboreum] (1)
|
|------------------------------------------------------------------- Gh_A07G2140 [Gossypium hirsutum] (77)
+
| /--------------------------------------------- (156)
| |
\---------100---------+ /---------------------- Gorai.001G275600.1 [Gossypium raimondii] (37)
\----------97----------+
\---------------------- Gh_D07G2352 [Gossypium hirsutum] (50)
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