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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Phylogenetic Tree for OGEM1998
| Phylogenetic tree for protein ? help Back to Top |
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Subtree rooted at node 128:
/----- XP_013597834.1 [Brassica oleracea] (2)
/-100+
| \----- GSBRNA2T00145022001 [Brassica napus] (68)
/-100+
| | /----- GSBRNA2T00047582001 [Brassica napus] (8)
| \-100+
/-100-+ \----- XP_009121154.1 [Brassica rapa] (28)
| |
| | /----- RrC1100_p6 [Raphanus raphanistrum] (31)
/-100+ \---100---+
| | \----- Rsa1.0_00352.1_g00008.1 [Raphanus sativus] (59)
| |
| \--------------------- 676777966 [Sisymbrium irio] (41)
|
| /----- GSBRNA2T00147403001 [Brassica napus] (21)
/-100+ /-100+
| | | \----- XP_009150852.1 [Brassica rapa] (29)
| | /-100+
| | | | /----- GSBRNA2T00125045001 [Brassica napus] (34)
| | | \-100+
| | | \----- XP_013629275.1 [Brassica oleracea] (36)
| \----100---+
/-100+ | /----- Rsa1.0_08072.1_g00002.1 [Raphanus sativus] (30)
| | | |
| | \---100---+----- RrC3152_p3 [Raphanus raphanistrum] (45)
| | |
/-100+ | \----- Rsa1.0_23065.1_g00001.1 [Raphanus sativus] (65)
| | |
| | \------------------------------- Tp3g30490 [Thellungiella parvula] (57)
| |
| \------------------------------------ Thhalv10022536m [Eutrema salsugineum] (58)
|
| /---------- AT2G17150.1 [Arabidopsis thaliana] (6)
/-100+ |
| | /----100---+ /----- Araha.7578s0001.1.p [Arabidopsis halleri] (9)
| | | \-100+
| | | \----- 875028 [Arabidopsis lyrata] (43)
| | |
| | | /----- Csa01g032730.1 [Camelina sativa] (11)
| \--------100--------+ /-100+
| | | \----- Csa19g053930.1 [Camelina sativa] (15)
| | /-100+
/----100---+ | | \---------- Csa15g074220.1 [Camelina sativa] (25)
| | | |
| | \-100-+ /----- Carubv10012927m [Capsella rubella] (14)
| | | /-100+
| | | | \----- Cagra.0805s0015.1.p [Capsella grandiflora] (73)
| | \-87-+
| | \---------- Bostr.18351s0175.1.p [Boechera stricta] (70)
| |
| \---------------------------------------------- AA33G00033 [Aethionema arabicum] (39)
|
| /--------------- Rsa1.0_00094.1_g00020.1 [Raphanus sativus] (7)
| |
| | /----- GSBRNA2T00130911001 [Brassica napus] (20)
| /-100-+ /-100+
| | | | \----- XP_013604758.1 [Brassica oleracea] (74)
| | \-100+
| | | /----- XP_009103570.1 [Brassica rapa] (51)
| | \-100+
| | \----- GSBRNA2T00121384001 [Brassica napus] (61)
| |
| /-100+ /----- XP_009138351.1 [Brassica rapa] (32)
| | | /-100+
| | | | \----- GSBRNA2T00071498001 [Brassica napus] (71)
| | | /-100+
| | | | | /----- GSBRNA2T00100063001 [Brassica napus] (35)
| | | | \-100+
| /-100+ \-100-+ \----- XP_013599251.1 [Brassica oleracea] (37)
/-100+ | | |
| | | | | /----- Rsa1.0_00678.1_g00001.1 [Raphanus sativus] (38)
| | | | \---100---+
| | | | \----- RrC165_p9 [Raphanus raphanistrum] (47)
| | /-100+ |
| | | | \-------------------------- 676721284 [Sisymbrium irio] (53)
| | | |
| | | | /----- Rsa1.0_02421.1_g00001.1 [Raphanus sativus] (60)
| | /-88-+ \-----------100-----------+
| | | | \----- RrC392_p7 [Raphanus raphanistrum] (72)
| | | |
| | /-100+ \------------------------------------ Tp7g33050 [Thellungiella parvula] (40)
| | | |
| | | \----------------------------------------- Thhalv10024319m [Eutrema salsugineum] (76)
| | |
| | | /----- Carubv10004068m [Capsella rubella] (16)
| | | /---100---+
| | | | \----- Cagra.2350s0071.1.p [Capsella grandiflora] (63)
--100+ | | |
| | /-100-+ /-100-+ /---------- Csa12g008230.1 [Camelina sativa] (22)
| | | | | | |
| | | | | \-100+ /----- Csa10g006860.1 [Camelina sativa] (26)
| | | | /-99-+ \-100+
| | | | | | \----- Csa11g006520.1 [Camelina sativa] (33)
| | | | | |
| | | | | \--------------------- Bostr.7867s1388.1.p [Boechera stricta] (62)
| \-100+ \--------100--------+
| | | /----- Araha.0473s0001.1.p [Arabidopsis halleri] (42)
| | | /-100+
| | | | \----- 491122 [Arabidopsis lyrata] (54)
| | \------100------+
| | \---------- AT4G35270.1 [Arabidopsis thaliana] (67)
| |
| \---------------------------------------------------- AA79G00017 [Aethionema arabicum] (75)
|
| /----- XP_010548150.1 [Tarenaya hassleriana] (17)
\---------------------------100--------------------------+
\----- XP_010530951.1 [Tarenaya hassleriana] (66)
Root part of tree:
/------------------------------------------------------------------- Gh_A12G0297 [Gossypium hirsutum] (1)
|
|------------------------------------------------------------------- Cotton_A_02095_BGI-A2_v1.0 [Gossypium arboreum] (13)
|
| /------- (128)
| /-------------100-------------+
| | \------- evm.model.supercontig_20.206 [Carica papaya] (64)
| |
| | /------- EcC048543.20 [Eucalyptus camaldulensis] (3)
| | /------100-----+
| | | \------- Neem_23926_f_4 [Azadirachta indica] (10)
| /--100--+ |
| | | /--100--+ /------- Eucgr.G01859.1.p [Eucalyptus grandis] (5)
| | | | | /--100--+
| | | | | | \------- EcS571845.10 [Eucalyptus camaldulensis] (49)
| | | | \--100-+
| | | | \--------------- Eucgr.I01519.1.p [Eucalyptus grandis] (46)
| | \--100-+
| | | /------- Ciclev10027765m [Citrus clementina] (4)
+ | | /--100--+
| | | | \------- orange1.1g004957m [Citrus sinensis] (44)
| | \------100-----+
| | | /------- Neem_11279_f_2 [Azadirachta indica] (19)
| /--100-+ \--100--+
| | | \------- Neem_21949_f_1 [Azadirachta indica] (52)
| | |
| | | /------- Cotton_A_00586_BGI-A2_v1.0 [Gossypium arboreum] (24)
| | | /--100--+
| | | | \------- Gh_A03G1857 [Gossypium hirsutum] (69)
| | |-------------100-------------+
| | | | /------- Gorai.005G259100.1 [Gossypium raimondii] (27)
| /--100--+ | \--100--+
| | | | \------- Gh_D02G2296 [Gossypium hirsutum] (50)
| | | |
| | | \--------------------------------------------- Thecc1EG006453t1 [Theobroma cacao] (77)
| | |
| | | /------- Gh_A01G1468 [Gossypium hirsutum] (12)
| | | /--100--+
\--100-+ | | \------- Cotton_A_33891_BGI-A2_v1.0 [Gossypium arboreum] (55)
| \-----------------100----------------+
| | /------- Gorai.002G206700.1 [Gossypium raimondii] (18)
| \--100--+
| \------- Gh_D01G1705 [Gossypium hirsutum] (23)
|
| /------- Gh_D12G0368 [Gossypium hirsutum] (48)
\-------------------------100------------------------+
\------- Gorai.008G041100.1 [Gossypium raimondii] (56)
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