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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Phylogenetic Tree for OGEM2012
| Phylogenetic tree for protein ? help Back to Top |
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Subtree rooted at node 140:
/----- Csa12g022020.1 [Camelina sativa] (3)
/-100+
| \----- Csa11g015260.1 [Camelina sativa] (79)
/-100+
| \---------- Csa10g014120.1 [Camelina sativa] (57)
/--89-+
| | /----- Carubv10005324m [Capsella rubella] (24)
| \---100---+
/-99-+ \----- Cagra.1225s0041.1.p [Capsella grandiflora] (28)
| |
| \--------------------- Bostr.7867s0691.1.p [Boechera stricta] (66)
|
/-80-+ /----- 857774 [Arabidopsis lyrata] (8)
| | /-100+
| | | \----- Araha.3365s0004.1.p [Arabidopsis halleri] (17)
| \-------98------+
| \---------- AT4G28500.1 [Arabidopsis thaliana] (25)
|
| /----- GSBRNA2T00065806001 [Brassica napus] (10)
| /-100+
| | \----- XP_013609952.1 [Brassica oleracea] (60)
| /-91-+
| | | /----- XP_009129565.1 [Brassica rapa] (71)
| | \-100+
| /--72-+ \----- GSBRNA2T00058097001 [Brassica napus] (72)
| | |
| | | /----- RrC1054_p2 [Raphanus raphanistrum] (59)
| | \---100---+
| | \----- Rsa1.0_00476.1_g00004.1 [Raphanus sativus] (65)
| |
/-50-+ | /----- XP_013596215.1 [Brassica oleracea] (15)
| | /-50-+ /-100+
| | | | | \----- GSBRNA2T00154717001 [Brassica napus] (20)
| | | | /-98-+
| | | | | \---------- Rsa1.0_00113.1_g00021.1 [Raphanus sativus] (69)
| | | | |
| | | | | /----- XP_009137790.1 [Brassica rapa] (35)
| | | \-100-+---100---+
| | | | \----- GSBRNA2T00044371001 [Brassica napus] (48)
| |-50-+ |
| | | \--------------- RrC6425_p1 [Raphanus raphanistrum] (63)
/-100+ | |
| | | |-------------------------- Tp7g26480 [Thellungiella parvula] (40)
| | | |
| | | |-------------------------- Thhalv10025819m [Eutrema salsugineum] (50)
| | | |
| | | \-------------------------- 676753192 [Sisymbrium irio] (55)
| | |
| | \------------------------------- KFK29384.1 [Arabis alpina] (76)
| |
| |------------------------------------ XP_010526500.1 [Tarenaya hassleriana] (41)
| |
| \------------------------------------ AA102G00007 [Aethionema arabicum] (68)
|
| /----- Neem_14534_f_2 [Azadirachta indica] (4)
| /-100+
/-100+ | \----- Neem_12089_f_2 [Azadirachta indica] (74)
| | /----94----+
| | | \---------- Eucgr.K01061.1.p [Eucalyptus grandis] (36)
| | |
| | | /----- Gh_D12G1407 [Gossypium hirsutum] (9)
| | | /-97-+
| | /-95-+ | \----- Gorai.008G155200.1 [Gossypium raimondii] (73)
| | | | /-100+
| | | | | | /----- Gh_A12G1285 [Gossypium hirsutum] (32)
| | | | | \-84-+
| | | \-100-+ \----- Cotton_A_04481_BGI-A2_v1.0 [Gossypium arboreum] (42)
| | /-95-+ |
/--80-+ | | | \--------------- Thecc1EG008229t1 [Theobroma cacao] (30)
| | | | |
| | | | | /----- orange1.1g021635m [Citrus sinensis] (7)
| | \---100---+ \---------100--------+
| | | \----- Ciclev10017822m [Citrus clementina] (51)
| | |
| | \------------------------------- evm.model.supercontig_83.99 [Carica papaya] (81)
| |
| | /----- Gorai.010G157600.1 [Gossypium raimondii] (21)
| | /-100+
| | | \----- Gh_D06G1417 [Gossypium hirsutum] (44)
| \----------------100----------------+
| | /----- Cotton_A_37659_BGI-A2_v1.0 [Gossypium arboreum] (27)
| \-99-+
| \----- Gh_A06G2028 [Gossypium hirsutum] (52)
|
| /----- Cotton_A_11313_BGI-A2_v1.0 [Gossypium arboreum] (6)
| /-67-+
| | \----- Gh_A05G1339 [Gossypium hirsutum] (12)
| /-100+
| | | /----- Gh_D05G1508 [Gossypium hirsutum] (11)
| | \-100+
/-100+-----------------100----------------+ \----- Gorai.009G166300.1 [Gossypium raimondii] (22)
| | |
| | \--------------- Thecc1EG029798t1 [Theobroma cacao] (54)
| |
| | /----- Eucgr.D00591.1.p [Eucalyptus grandis] (13)
| | /-89-+
| | | \----- Eucgr.D00592.1.p [Eucalyptus grandis] (80)
| | |
| | /-100+ /----- Eucgr.D00594.1.p [Eucalyptus grandis] (26)
| | | | |
| | | \-91-+----- Eucgr.D00595.1.p [Eucalyptus grandis] (29)
| | | |
/-89-+ | /--87-+ \----- EcS577108.10 [Eucalyptus camaldulensis] (77)
| | | | |
| | | | | /----- Eucgr.E03226.1.p [Eucalyptus grandis] (14)
| | |--------------57--------------+ \---100---+
| | | | \----- EcC025730.20 [Eucalyptus camaldulensis] (23)
| | | |
| | | \--------------------- evm.model.supercontig_2586.1 [Carica papaya] (37)
| | |
| | | /----- Ciclev10015976m [Citrus clementina] (43)
--51-+ | \----------------------100---------------------+
| | \----- Neem_17750_f_1 [Azadirachta indica] (47)
| |
| \--------------------------------------------------------- XP_010549363.1 [Tarenaya hassleriana] (38)
|
| /----- Carubv10009638m [Capsella rubella] (34)
| /-100+
| | \----- Cagra.1822s0012.1.p [Capsella grandiflora] (64)
\-------------------------92------------------------+
| /----- Csa17g039350.1 [Camelina sativa] (46)
\-100+
\----- Csa03g031810.1 [Camelina sativa] (70)
Root part of tree:
/------------------------------------------------------------------- Tp1g24720 [Thellungiella parvula] (1)
|
| /-------- XP_009102906.1 [Brassica rapa] (5)
| /---63---+
| | \-------- GSBRNA2T00089877001 [Brassica napus] (49)
|-----------------------100-----------------------+
| | /-------- GSBRNA2T00157940001 [Brassica napus] (53)
| \---100--+
| \-------- XP_013596124.1 [Brassica oleracea] (67)
|
| /-------- Rsa1.0_00601.1_g00016.1 [Raphanus sativus] (2)
| /-------100------+
| | \-------- RrC18663_p1 [Raphanus raphanistrum] (58)
+ |
| |------------------------- 676750274 [Sisymbrium irio] (31)
| /----------------98---------------+
| | | /----------------- XP_009113660.1 [Brassica rapa] (33)
| | | |
| | | |----------------- GSBRNA2T00003406001 [Brassica napus] (39)
| | \--100--+
| | | /-------- GSBRNA2T00046259001 [Brassica napus] (45)
| | \---100--+
| | \-------- XP_013638897.1 [Brassica oleracea] (78)
| |
| | /-------- (140)
| | /-------55-------+
\---98--+ | \-------- Bostr.15697s0168.1.p [Boechera stricta] (56)
| |
| /---61--+ /-------- 890389 [Arabidopsis lyrata] (16)
| | | /---99---+
| | | | \-------- Araha.5599s0009.1.p [Arabidopsis halleri] (62)
| /---63---+ \---99--+
| | | \----------------- AT1G28470.1 [Arabidopsis thaliana] (75)
| | |
| /---57--+ \--------------------------------- AA361G00005 [Aethionema arabicum] (61)
| | |
\---76---+ \------------------------------------------ KFK44718.1 [Arabis alpina] (18)
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\-------------------------------------------------- Thhalv10008249m [Eutrema salsugineum] (19)
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