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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Phylogenetic Tree for OGEM2022
| Phylogenetic tree for protein ? help Back to Top |
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Subtree rooted at node 108:
/----- Carubv10012162m [Capsella rubella] (2)
/---100---+
| \----- Cagra.4122s0002.1.p [Capsella grandiflora] (21)
|
| /----- Csa03g059130.1 [Camelina sativa] (29)
/-100-+ |
| | /-100+----- Csa17g092100.1 [Camelina sativa] (56)
| | | |
| \-100+ \----- Csa14g060390.1 [Camelina sativa] (57)
| |
/------100-----+ \---------- Bostr.0124s0004.1.p [Boechera stricta] (55)
| |
| | /----- 314555 [Arabidopsis lyrata] (6)
| | /-74-+
| | | \----- AT1G52150.2 [Arabidopsis thaliana] (30)
| \----55----+
| \---------- Araha.2499s0002.1.p [Arabidopsis halleri] (15)
|
| /--------------------- Rsa1.0_00125.1_g00012.1 [Raphanus sativus] (14)
| |
| | /----- GSBRNA2T00114236001 [Brassica napus] (18)
| | /-99-+
| /-100+ | \----- XP_009107147.1 [Brassica rapa] (65)
/-100+ | | /-62-+
| | | | | \---------- GSBRNA2T00098397001 [Brassica napus] (31)
| | | \-100-+
| | | \--------------- XP_013621760.1 [Brassica oleracea] (41)
| | /-100+
| | | | /----- RrC974_p5 [Raphanus raphanistrum] (16)
| | | | /---100---+
| | | | | \----- Rsa1.0_03390.1_g00004.1 [Raphanus sativus] (34)
| | | | |
| | | \----100---+ /----- GSBRNA2T00029833001 [Brassica napus] (26)
| | | | /-97-+
| | | | | \----- XP_009147709.1 [Brassica rapa] (48)
/-100+ \-100+ \-100+
| | | | /----- GSBRNA2T00088278001 [Brassica napus] (62)
| | | \-100+
| | | \----- XP_013592012.1 [Brassica oleracea] (64)
| | |
| | | /---------- 676786782 [Sisymbrium irio] (33)
| | | |
/-100-+ | \---------80---------+ /----- Thhalv10011238m [Eutrema salsugineum] (53)
| | | \-95-+
| | | \----- Tp1g38700 [Thellungiella parvula] (71)
| | |
| | \----------------------------------------- AA15G00017 [Aethionema arabicum] (40)
| |
| | /----- XP_010535179.1 [Tarenaya hassleriana] (17)
/-82-+ \-------------------100------------------+
| | \----- XP_010545669.1 [Tarenaya hassleriana] (50)
| |
| | /----- Ciclev10024891m [Citrus clementina] (4)
| | /-100+
| | | \----- orange1.1g048771m [Citrus sinensis] (54)
/-100+ \-------------------100-------------------+
| | \---------- Neem_2214_f_1 [Azadirachta indica] (11)
| |
| | /---------- Thecc1EG028866t1 [Theobroma cacao] (22)
| | |
| | | /----- Gh_A05G1085 [Gossypium hirsutum] (37)
| \----------------------100---------------------+ |
--100+ | |----- Gh_D05G1263 [Gossypium hirsutum] (45)
| \-100+
| |----- Gorai.009G136800.1 [Gossypium raimondii] (69)
| |
| \----- Cotton_A_05396_BGI-A2_v1.0 [Gossypium arboreum] (70)
|
\-------------------------------------------------------------- Eucgr.F03066.1.p [Eucalyptus grandis] (58)
Subtree rooted at node 143:
/--------------- (108)
|
| /----- Rsa1.0_13763.1_g00001.1 [Raphanus sativus] (24)
/--86-+ /-100+
| | | \----- Csa18g034040.1 [Camelina sativa] (39)
| \-100+
/-79-+ \---------- Neem_29055_f_1 [Azadirachta indica] (44)
| |
| | /----- Eucgr.C00605.1.p [Eucalyptus grandis] (61)
| \------100------+
| \----- EcC051199.10 [Eucalyptus camaldulensis] (67)
/------------80-----------+
| | /----- Ciclev10007435m [Citrus clementina] (20)
| | /-100+
| | | \----- orange1.1g003071m [Citrus sinensis] (72)
| \-------94------+
| \---------- Neem_11133_f_6 [Azadirachta indica] (52)
|
| /----- Araha.17232s0001.1.p [Arabidopsis halleri] (5)
| /-100+
| | \----- 491408 [Arabidopsis lyrata] (63)
| /-100+
| | \---------- AT4G32880.1 [Arabidopsis thaliana] (38)
| /--64-+
| | \--------------- Bostr.7867s1139.1.p [Boechera stricta] (46)
| |
| | /----- Csa10g009430.1 [Camelina sativa] (7)
| /-100+ |
| | | /-100+----- Csa12g012990.1 [Camelina sativa] (9)
| | | | |
| | | | \----- Csa11g010300.1 [Camelina sativa] (23)
| | \----83----+
| /-92-+ | /----- Carubv10004127m [Capsella rubella] (68)
| | | \-100+
/-100+ | | \----- Cagra.4093s0017.1.p [Capsella grandiflora] (73)
| | | |
| | | \-------------------------- Thhalv10024403m [Eutrema salsugineum] (78)
| | |
| | | /--------------- XP_013622315.1 [Brassica oleracea] (10)
| | | |
| | | | /----- GSBRNA2T00040012001 [Brassica napus] (13)
| | |------100------+ /-100+
| | | | | \----- GSBRNA2T00081269001 [Brassica napus] (35)
| | /-83-+ \-53-+
| | | | \---------- XP_009108824.1 [Brassica rapa] (47)
| | | |
| | | | /----- XP_009125299.1 [Brassica rapa] (12)
| | | | /-100+
| | | | | \----- GSBRNA2T00088471001 [Brassica napus] (19)
| | | | /-100+
/-95-+ | /-100+ | | \---------- Rsa1.0_00017.1_g00136.1 [Raphanus sativus] (36)
| | | | | |-------54------+
| | | | | | \--------------- RrC810_p1 [Raphanus raphanistrum] (25)
| | | | | |
| | | /-100+ | \------------------------------- Tp7g30650 [Thellungiella parvula] (43)
| | | | | |
| | | | | \------------------------------------ 676780838 [Sisymbrium irio] (51)
| | \-100-+ |
| | | \----------------------------------------- AA651G00001 [Aethionema arabicum] (76)
| | |
| | \---------------------------------------------- XP_010526102.1 [Tarenaya hassleriana] (75)
| |
--100+ | /----- Gh_A06G0833 [Gossypium hirsutum] (3)
| | /-99-+
| | | \----- Cotton_A_22259_BGI-A2_v1.0 [Gossypium arboreum] (66)
| \----------------------100---------------------+
| | /----- Gh_D06G0966 [Gossypium hirsutum] (32)
| \-100+
| \----- Gorai.010G105900.1 [Gossypium raimondii] (60)
|
| /----- Gh_A05G0364 [Gossypium hirsutum] (42)
| /-74-+
| | \----- Cotton_A_20473_BGI-A2_v1.0 [Gossypium arboreum] (49)
\------------------------100------------------------+
| /----- Gorai.009G049100.1 [Gossypium raimondii] (59)
\-100+
\----- Gh_D05G0479 [Gossypium hirsutum] (77)
Root part of tree:
/------------------------------------------------------------------- Gh_D07G0220 [Gossypium hirsutum] (1)
|
|------------------------------------------------------------------- Gorai.001G026800.1 [Gossypium raimondii] (27)
|
+ /---------------------- (143)
| /----------100---------+
| | \---------------------- Thecc1EG037207t1 [Theobroma cacao] (28)
\---------100---------+
| /---------------------- Gh_A07G0163 [Gossypium hirsutum] (8)
\----------99----------+
\---------------------- Cotton_A_07197_BGI-A2_v1.0 [Gossypium arboreum] (74)
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