Subtree rooted at node 139:

                                                    /--------------------- Thecc1EG037666t1 [Theobroma cacao]                  (2)
                                                    |                                 
                                                    |               /----- Gh_A05G0220 [Gossypium hirsutum]                    (19)
                                                    |          /-99-+                 
                                                    |          |    \----- Cotton_A_09366_BGI-A2_v1.0 [Gossypium arboreum]     (68)
                                               /-100+     /-100+                      
                                               |    |     |    |    /----- Gh_D05G0299 [Gossypium hirsutum]                    (35)
                                               |    |     |    \-100+                 
                                               |    |     |         \----- Gorai.009G031400.1 [Gossypium raimondii]            (52)
                                               |    \-100-+                           
                                               |          |         /----- Gorai.010G082800.1 [Gossypium raimondii]            (41)
                                               |          |    /-88-+                 
                                               |          |    |    \----- Gh_D06G0725 [Gossypium hirsutum]                    (42)
                                               |          \-100+                      
                                          /-98-+               \---------- Cotton_A_33698_BGI-A2_v1.0 [Gossypium arboreum]     (47)
                                          |    |                                      
                                          |    |                    /----- Neem_23334_f_1 [Azadirachta indica]                 (18)
                                          |    |               /-100+                 
                                          |    |               |    \----- Neem_2839_f_2 [Azadirachta indica]                  (64)
                                          |    |          /-100+                      
                                          |    |          |    |    /----- Ciclev10009004m [Citrus clementina]                 (30)
                                          |    |          |    \-100+                 
                                          |    \----99----+         \----- orange1.1g021859m [Citrus sinensis]                 (53)
                                     /-100+               |                           
                                     |    |               \--------------- evm.model.supercontig_93.28 [Carica papaya]         (24)
                                     |    |                                           
                                     |    |               /--------------- Eucgr.C00899.1.p [Eucalyptus grandis]               (28)
                                     |    |               |                           
                                     |    |               |         /----- Ciclev10008943m [Citrus clementina]                 (46)
                                     |    |         /--99-+    /-100+                 
                           /---100---+    |         |     |    |    \----- orange1.1g020987m [Citrus sinensis]                 (67)
                           |         |    |         |     \-100+                      
                           |         |    \---100---+          \---------- Eucgr.C03048.1.p [Eucalyptus grandis]               (62)
                           |         |              |                                 
                           |         |              \--------------------- Eucgr.C03895.1.p [Eucalyptus grandis]               (72)
                           |         |                                                
                           |         |                              /----- XP_010545872.1 [Tarenaya hassleriana]               (21)
                           |         \--------------100-------------+                 
                           |                                        \----- XP_010539131.1 [Tarenaya hassleriana]               (51)
                           |                                                          
                           |                                   /---------- GSBRNA2T00075299001 [Brassica napus]                (3)
                           |                                   |                      
                           |                              /-100+    /----- GSBRNA2T00075300001 [Brassica napus]                (23)
                           |                              |    \-98-+                 
                           |                        /--96-+         \----- XP_009137582.1 [Brassica rapa]                      (39)
                           |                        |     |                           
                           |                   /-100+     \--------------- XP_013596028.1 [Brassica oleracea]                  (65)
                           |                   |    |                                 
                           |                   |    \--------------------- GSBRNA2T00064418001 [Brassica napus]                (45)
                           |                   |                                      
                           |                   |                    /----- XP_009142013.1 [Brassica rapa]                      (11)
                           |                   |               /-100+                 
                           |                   |               |    \----- GSBRNA2T00149587001 [Brassica napus]                (29)
                           |              /-100+          /-100+                      
                     /-100-+              |    |          |    |    /----- GSBRNA2T00157484001 [Brassica napus]                (37)
                     |     |              |    |          |    \-100+                 
                     |     |              |    |    /-100-+         \----- XP_013605327.1 [Brassica oleracea]                  (59)
                     |     |              |    |    |     |                           
                     |     |              |    |    |     |         /----- RrC3834_p4 [Raphanus raphanistrum]                  (40)
                     |     |              |    |    |     \---100---+                 
                     |     |         /-95-+    \-99-+               \----- Rsa1.0_00102.1_g00018.1 [Raphanus sativus]          (71)
                     |     |         |    |         |                                 
                     |     |         |    |         |--------------------- Tp7g24170 [Thellungiella parvula]                   (25)
                     |     |         |    |         |                                 
                     |     |         |    |         \--------------------- 676745902 [Sisymbrium irio]                         (69)
                     |     |         |    |                                           
                     |     |         |    \------------------------------- Thhalv10025461m [Eutrema salsugineum]               (5)
                     |     |         |                                                
                     |     |    /-100+                         /---------- AT4G26150.1 [Arabidopsis thaliana]                  (4)
                     |     |    |    |                         |                      
                     |     |    |    |         /------100------+    /----- 492197 [Arabidopsis lyrata]                         (12)
                     |     |    |    |         |               \-99-+                 
                     |     |    |    |         |                    \----- Araha.3974s0026.1.p [Arabidopsis halleri]           (74)
                     |     |    |    |         |                                      
                     |     |    |    |         |               /---------- Csa12g025910.1 [Camelina sativa]                    (10)
                     |     |    |    |         |               |                      
                     |     |    |    \---100---+          /-100+    /----- Csa10g016760.1 [Camelina sativa]                    (20)
                /-99-+     \-100+              |          |    \-100+                 
                |    |          |              |          |         \----- Csa11g018240.1 [Camelina sativa]                    (44)
                |    |          |              |    /--61-+                           
                |    |          |              |    |     |         /----- Carubv10005113m [Capsella rubella]                  (15)
                |    |          |              |    |     \---100---+                 
                |    |          |              \-100+               \----- Cagra.3467s0056.1.p [Capsella grandiflora]          (43)
                |    |          |                   |                                 
                |    |          |                   \--------------------- Bostr.7867s0434.1.p [Boechera stricta]              (14)
                |    |          |                                                     
                |    |          \----------------------------------------- AA81G00049 [Aethionema arabicum]                    (48)
                |    |                                                                
                |    |                                              /----- 495776 [Arabidopsis lyrata]                         (7)
                |    |                                         /-100+                 
                |    |                                         |    \----- Araha.14682s0003.1.p [Arabidopsis halleri]          (22)
                |    |                                    /-100+                      
           /-98-+    |                                    |    \---------- AT5G56860.1 [Arabidopsis thaliana]                  (36)
           |    |    |                              /-100-+                           
           |    |    |                              |     \--------------- Bostr.26833s0575.1.p [Boechera stricta]             (26)
           |    |    |                         /-89-+                                 
           |    |    |                         |    |               /----- Carubv10026556m [Capsella rubella]                  (60)
           |    |    |                         |    \------100------+                 
           |    |    |                         |                    \----- Cagra.4138s0005.1.p [Capsella grandiflora]          (66)
           |    |    \------------99-----------+                                      
           |    |                              |               /---------- Csa11g090330.1 [Camelina sativa]                    (50)
           |    |                              |               |                      
           |    |                              \------100------+    /----- Csa02g061170.1 [Camelina sativa]                    (55)
           |    |                                              \-100+                 
           |    |                                                   \----- Csa18g029770.1 [Camelina sativa]                    (63)
           |    |                                                                     
           |    \--------------------------------------------------------- AA44G00699 [Aethionema arabicum]                    (9)
           |                                                                          
      --97-+                                                        /----- RrC11754_p1 [Raphanus raphanistrum]                 (8)
           |                                              /---100---+                 
           |                                              |         \----- Rsa1.0_17697.1_g00001.1 [Raphanus sativus]          (13)
           |                                              |                           
           |                                        /-100-+         /----- XP_009120195.1 [Brassica rapa]                      (32)
           |                                        |     |    /-100+                 
           |                                        |     |    |    \----- GSBRNA2T00052811001 [Brassica napus]                (54)
           |                                        |     \-72-+                      
           |                                   /-100+          |    /----- GSBRNA2T00053040001 [Brassica napus]                (58)
           |                                   |    |          \-100+                 
           |                                   |    |               \----- XP_013606072.1 [Brassica oleracea]                  (61)
           |                                   |    |                                 
           |                                   |    \--------------------- 676710578 [Sisymbrium irio]                         (38)
           |                                   |                                      
           |                                   |               /---------- GSBRNA2T00046594001 [Brassica napus]                (31)
           \-----------------99----------------+               |                      
                                               |          /-100+    /----- XP_009132168.1 [Brassica rapa]                      (49)
                                               |          |    \-100+                 
                                               |    /-100-+         \----- GSBRNA2T00148627001 [Brassica napus]                (57)
                                               |    |     |                           
                                               |    |     \--------------- XP_013621875.1 [Brassica oleracea]                  (73)
                                               \-100+                                 
                                                    |               /----- RrC1037_p1 [Raphanus raphanistrum]                  (33)
                                                    \------100------+                 
                                                                    \----- Rsa1.0_00090.1_g00012.1 [Raphanus sativus]          (75)
                                                                                      
      Root part of tree:

      /------------------------------------------------------------------- GSBRNA2T00068371001 [Brassica napus]                (1)
      |                                                                               
      |------------------------------------------------------------------- XP_013616331.1 [Brassica oleracea]                  (34)
      |                                                                               
      |                                                 /----------------- (139)
      |                                                 |                             
      +                                 /------100------+----------------- Tp6g18580 [Thellungiella parvula]                   (27)
      |                                 |               |                             
      |                                 |               \----------------- Thhalv10013793m [Eutrema salsugineum]               (70)
      |                /-------100------+                                             
      |                |                |               /----------------- Rsa1.0_00716.1_g00014.1 [Raphanus sativus]          (6)
      |                |                \------100------+                             
      \-------100------+                                \----------------- RrC680_p1 [Raphanus raphanistrum]                   (16)
                       |                                                              
                       |                                /----------------- XP_009126922.1 [Brassica rapa]                      (17)
                       \---------------100--------------+                             
                                                        \----------------- GSBRNA2T00012910001 [Brassica napus]                (56)