Subtree rooted at node 131:

                                                                    /----- Gorai.004G220800.1 [Gossypium raimondii]                (2)
                                                               /-84-+                 
                                                               |    \----- Gh_D08G2044 [Gossypium hirsutum]                        (5)
                                               /------100------+                      
                                               |               |    /----- Cotton_A_20664_BGI-A2_v1.0 [Gossypium arboreum]         (10)
                                               |               \-88-+                 
                                               |                    \----- Gh_A08G1686 [Gossypium hirsutum]                        (17)
                                               |                                      
                                               |                    /----- Cotton_A_03026_BGI-A2_v1.0 [Gossypium arboreum]         (12)
                                          /-100+               /-100+                 
                                          |    |               |    \----- Gh_A11G1199 [Gossypium hirsutum]                        (13)
                                          |    |          /-66-+                      
                                          |    |          |    \---------- Gh_D11G1357 [Gossypium hirsutum]                        (46)
                                          |    |    /-100-+                           
                                     /-51-+    |    |     \--------------- Gorai.007G145800.1 [Gossypium raimondii]                (54)
                                     |    |    \-99-+                                 
                                     |    |         \--------------------- Thecc1EG004056t1 [Theobroma cacao]                      (28)
                                     |    |                                           
                                /-55-+    |                         /----- Ciclev10021622m [Citrus clementina]                     (42)
                                |    |    \-----------100-----------+                 
                                |    |                              \----- orange1.1g042174m [Citrus sinensis]                     (72)
                                |    |                                                
                           /-64-+    \------------------------------------ Neem_6825_f_1 [Azadirachta indica]                      (71)
                           |    |                                                     
                           |    |----------------------------------------- XP_010522157.1 [Tarenaya hassleriana]                   (26)
                /----60----+    |                                                     
                |          |    \----------------------------------------- EcC014511.10 [Eucalyptus camaldulensis]                 (68)
                |          |                                                          
                |          \---------------------------------------------- Eucgr.K03266.1.p [Eucalyptus grandis]                   (34)
                |                                                                     
                |                                                   /----- Gh_D11G2586 [Gossypium hirsutum]                        (4)
                |                                              /-100+                 
                |                                              |    \----- Gorai.007G280800.1 [Gossypium raimondii]                (6)
                |                                         /-100+                      
                |                                         |    |    /----- Cotton_A_28370_BGI-A2_v1.0 [Gossypium arboreum]         (52)
                |                                         |    \-100+                 
                |                                   /--51-+         \----- Gh_A11G2280 [Gossypium hirsutum]                        (55)
                |                                   |     |                           
                |                                   |     |         /----- Gh_D11G2587 [Gossypium hirsutum]                        (57)
                |                                   |     \----89---+                 
                |                              /-100+               \----- Gorai.007G280900.1 [Gossypium raimondii]                (73)
                |                              |    |                                 
                |                              |    |               /----- Gh_A11G2281 [Gossypium hirsutum]                        (44)
                |                              |    \------100------+                 
                |                              |                    \----- Cotton_A_28371_BGI-A2_v1.0 [Gossypium arboreum]         (59)
                |                         /-86-+                                      
                |                         |    |                    /----- Gorai.013G186700.1 [Gossypium raimondii]                (9)
                |                         |    |               /-100+                 
                |                         |    |               |    \----- Gh_D13G1807 [Gossypium hirsutum]                        (60)
                |                         |    \------100------+                      
                |                    /-99-+                    |    /----- Gh_A13G1479 [Gossypium hirsutum]                        (21)
                |                    |    |                    \-100+                 
           /-100+                    |    |                         \----- Cotton_A_12843_BGI-A2_v1.0 [Gossypium arboreum]         (51)
           |    |                    |    |                                           
           |    |                    |    \------------------------------- Thecc1EG026234t1 [Theobroma cacao]                      (8)
           |    |                    |                                                
           |    |                    |                              /----- Cotton_A_12842_BGI-A2_v1.0 [Gossypium arboreum]         (7)
           |    |                    |                         /-99-+                 
           |    |                    |                         |    \----- Gh_A13G1480 [Gossypium hirsutum]                        (31)
           |    |               /-99-+                    /-100+                      
           |    |               |    |                    |    |    /----- Gh_D13G1806 [Gossypium hirsutum]                        (25)
           |    |               |    |                    |    \-100+                 
           |    |               |    |                    |         \----- Gorai.013G186800.1 [Gossypium raimondii]                (41)
           |    |               |    |              /--91-+                           
           |    |               |    |              |     |         /----- Gh_A11G2282 [Gossypium hirsutum]                        (14)
           |    |               |    |              |     |    /-100+                 
           |    |               |    |              |     |    |    \----- Cotton_A_28373_BGI-A2_v1.0 [Gossypium arboreum]         (23)
           |    |          /-70-+    |              |     \-100+                      
           |    |          |    |    \------99------+          |    /----- Gh_D11G2588 [Gossypium hirsutum]                        (32)
           |    |          |    |                   |          \-88-+                 
           |    |          |    |                   |               \----- Gorai.007G281000.1 [Gossypium raimondii]                (35)
           |    |          |    |                   |                                 
           |    |          |    |                   \--------------------- Thecc1EG026233t1 [Theobroma cacao]                      (40)
           |    |    /--70-+    |                                                     
           |    |    |     |    \----------------------------------------- evm.model.supercontig_162.25 [Carica papaya]            (47)
           |    |    |     |                                                          
           |    |    |     |                                        /----- orange1.1g047387m [Citrus sinensis]                     (43)
           |    |    |     |                                   /-100+                 
      --100+    \-70-+     |                                   |    \----- Ciclev10024142m [Citrus clementina]                     (64)
           |         |     \----------------100----------------+                      
           |         |                                         \---------- Neem_876_f_4 [Azadirachta indica]                       (58)
           |         |                                                                
           |         \---------------------------------------------------- Eucgr.H04254.1.p [Eucalyptus grandis]                   (61)
           |                                                                          
           |                                                        /----- Gh_A10G1008 [Gossypium hirsutum]                        (15)
           |                                                   /-93-+                 
           |                                                   |    \----- Cotton_A_33155_BGI-A2_v1.0 [Gossypium arboreum]         (48)
           |                                              /-100+                      
           |                                              |    |    /----- Gh_D10G1537 [Gossypium hirsutum]                        (22)
           |                                              |    \-82-+                 
           |                                              |         \----- Gorai.011G173000.1 [Gossypium raimondii]                (38)
           |                                        /--99-+                           
           |                                        |     |    /---------- Cotton_A_22458_BGI-A2_v1.0 [Gossypium arboreum]         (18)
           |                                        |     |    |                      
           |                                        |     \-100+    /----- Gorai.005G049300.1 [Gossypium raimondii]                (49)
           |                                   /-99-+          \-74-+                 
           |                                   |    |               \----- Gh_D02G0430 [Gossypium hirsutum]                        (76)
           |                                   |    |                                 
           |                              /-55-+    \--------------------- Thecc1EG020871t1 [Theobroma cacao]                      (16)
           |                              |    |                                      
           |                              |    \-------------------------- Eucgr.H03088.1.p [Eucalyptus grandis]                   (70)
           |                         /-55-+                                           
           |                         |    |                         /----- Ciclev10005820m [Citrus clementina]                     (36)
           |                         |    \-----------100-----------+                 
           \------------55-----------+                              \----- orange1.1g039409m [Citrus sinensis]                     (45)
                                     |                                                
                                     \------------------------------------ evm.model.supercontig_44.71 [Carica papaya]             (56)
                                                                                      
      Root part of tree:

      /------------------------------------------------------------------- Bostr.19424s0319.1.p [Boechera stricta]                 (1)
      |                                                                               
      |                                                          /-------- Csa01g027770.1 [Camelina sativa]                        (27)
      |                                                 /---80---+                    
      |                                                 |        \-------- Csa15g044190.1 [Camelina sativa]                        (69)
      |                                         /--100--+                             
      |                                         |       \----------------- Csa19g033660.1 [Camelina sativa]                        (67)
      |--------------------76-------------------+                                     
      |                                         |                /-------- Cagra.8559s0001.1.p [Capsella grandiflora]              (50)
      |                                         \-------100------+                    
      |                                                          \-------- Carubv10014553m [Capsella rubella]                      (65)
      |                                                                               
      |                                                 /----------------- (131)
      |                                                 |                             
      |                                         /--100--+        /-------- XP_010527399.1 [Tarenaya hassleriana]                   (29)
      +                                         |       \---100--+                    
      |                                         |                \-------- XP_010532635.1 [Tarenaya hassleriana]                   (39)
      |                                         |                                     
      |       /----------------59---------------+                /-------- 898836 [Arabidopsis lyrata]                             (37)
      |       |                                 |       /---100--+                    
      |       |                                 |       |        \-------- Araha.2163s0001.1.p [Arabidopsis halleri]               (62)
      |       |                                 \--100--+                             
      |       |                                         \----------------- AT3G23240.1 [Arabidopsis thaliana]                      (53)
      |       |                                                                       
      |       |                                         /----------------- GSBRNA2T00058558001 [Brassica napus]                    (3)
      |       |                                         |                             
      |       |                                         |----------------- XP_009108108.1 [Brassica rapa]                          (11)
      |       |                                         |                             
      |       |                                 /---88--+        /-------- RrC3845_p1 [Raphanus raphanistrum]                      (33)
      |       |                                 |       |---99---+                    
      \---75--+                                 |       |        \-------- Rsa1.0_00117.1_g00004.1 [Raphanus sativus]              (74)
              |                         /--100--+       |                             
              |                         |       |       \----------------- XP_009108096.1 [Brassica rapa]                          (75)
              |                         |       |                                     
              |                         |       \------------------------- XP_013588419.1 [Brassica oleracea]                      (66)
              |                /---89---+                                             
              |                |        |--------------------------------- Tp3g20890 [Thellungiella parvula]                       (19)
              |                |        |                                             
              |        /---51--+        \--------------------------------- 676761356 [Sisymbrium irio]                             (24)
              |        |       |                                                      
              |        |       |                                 /-------- Thhalv10022374m [Eutrema salsugineum]                   (20)
              \---95---+       \---------------100---------------+                    
                       |                                         \-------- AA17G00123 [Aethionema arabicum]                        (63)
                       |                                                              
                       \-------------------------------------------------- KFK39613.1 [Arabis alpina]                              (30)