Subtree rooted at node 88:

                                                                    /----- Cotton_A_07705_BGI-A2_v1.0 [Gossypium arboreum]      (2)
                                                               /-100+                 
                                                               |    \----- Gh_A11G0710 [Gossypium hirsutum]                     (51)
                                                          /-100+                      
                                                          |    |    /----- Gorai.007G088300.1 [Gossypium raimondii]             (23)
                                                          |    \-100+                 
                                                          |         \----- Gh_D11G0826 [Gossypium hirsutum]                     (28)
                                                    /--82-+                           
                                                    |     |         /----- Cotton_A_31202_BGI-A2_v1.0 [Gossypium arboreum]      (15)
                                                    |     |    /-100+                 
                                                    |     |    |    \----- Gh_Sca008309G01 [Gossypium hirsutum]                 (27)
                                               /-100+     \-100+                      
                                               |    |          \---------- Gorai.008G106900.1 [Gossypium raimondii]             (25)
                                               |    |                                 
                                               |    \--------------------- Thecc1EG005607t2 [Theobroma cacao]                   (19)
                                               |                                      
                                          /-99-+                    /----- orange1.1g012387m [Citrus sinensis]                  (4)
                                          |    |               /-100+                 
                                          |    |               |    \----- Ciclev10020053m [Citrus clementina]                  (31)
                                          |    |               |                      
                                          |    |               |    /----- Neem_24648_f_1 [Azadirachta indica]                  (6)
                     /---------100--------+    \-------95------+-100+                 
                     |                    |                    |    \----- Neem_7148_f_6 [Azadirachta indica]                   (36)
                     |                    |                    |                      
                     |                    |                    \---------- evm.model.supercontig_212.3 [Carica papaya]          (17)
                     |                    |                                           
                     |                    \------------------------------- Eucgr.D02499.1.p [Eucalyptus grandis]                (46)
                     |                                                                
                     |                                              /----- Csa13g057420.1 [Camelina sativa]                     (3)
                     |                                         /-97-+                 
                     |                                         |    \----- Csa08g001060.1 [Camelina sativa]                     (8)
                     |                                    /-84-+                      
                     |                                    |    \---------- Csa02g001100.1 [Camelina sativa]                     (11)
                     |                              /--99-+                           
                     |                              |     |         /----- Cagra.20893s0010.1.p [Capsella grandiflora]          (5)
                     |                              |     \---100---+                 
                     |                         /-50-+               \----- Carubv10001567m [Capsella rubella]                   (29)
                     |                         |    |                                 
                     |                         |    \--------------------- Bostr.14547s0014.1.p [Boechera stricta]              (49)
                     |                         |                                      
                     |          /------100-----+                    /----- 912247 [Arabidopsis lyrata]                          (13)
                     |          |              |               /-61-+                 
                     |          |              |               |    \----- AT4G00050.1 [Arabidopsis thaliana]                   (34)
                /-100+          |              \------100------+                      
                |    |          |                              \---------- Araha.24635s0006.1.p [Arabidopsis halleri]           (42)
                |    |          |                                                     
                |    |          |              /-------------------------- Tp6g00110 [Thellungiella parvula]                    (7)
                |    |          |              |                                      
                |    |          |              |                    /----- GSBRNA2T00153547001 [Brassica napus]                 (9)
                |    |          |              |               /-89-+                 
                |    |          |              |               |    \----- XP_013621948.1 [Brassica oleracea]                   (24)
                |    |          |              |          /-89-+                      
                |    |          |              |          |    \---------- GSBRNA2T00112124001 [Brassica napus]                 (38)
                |    |          |              |          |                           
                |    |     /-100+              |    /--90-+--------------- GSBRNA2T00015930001 [Brassica napus]                 (12)
                |    |     |    |              |    |     |                           
                |    |     |    |              |    |     |         /----- GSBRNA2T00138761001 [Brassica napus]                 (43)
                |    |     |    |         /-100+-100+     \----89---+                 
                |    |     |    |         |    |    |               \----- XP_009133970.1 [Brassica rapa]                       (48)
                |    |     |    |         |    |    |                                 
           /-61-+    |     |    |         |    |    \--------------------- Rsa1.0_02945.1_g00004.1 [Raphanus sativus]           (14)
           |    |    |     |    |         |    |                                      
           |    |    |     |    |         |    |                    /----- GSBRNA2T00045731001 [Brassica napus]                 (16)
           |    |    |     |    |         |    |               /-100+                 
           |    |    \-100-+    |    /-100+    |               |    \----- XP_009111529.1 [Brassica rapa]                       (22)
           |    |          |    |    |    |    |          /-100+                      
           |    |          |    |    |    |    |          |    \---------- XP_013610255.1 [Brassica oleracea]                   (40)
           |    |          |    |    |    |    \----100---+                           
           |    |          |    \-100+    |               \--------------- Rsa1.0_01001.1_g00008.1 [Raphanus sativus]           (33)
      --75-+    |          |         |    |                                           
           |    |          |         |    \------------------------------- Thhalv10028687m [Eutrema salsugineum]                (44)
           |    |          |         |                                                
           |    |          |         \------------------------------------ KFK30585.1 [Arabis alpina]                           (26)
           |    |          |                                                          
           |    |          \---------------------------------------------- XP_010523094.1 [Tarenaya hassleriana]                (50)
           |    |                                                                     
           |    \--------------------------------------------------------- Neem_10371_f_1 [Azadirachta indica]                  (35)
           |                                                                          
           \-------------------------------------------------------------- evm.model.supercontig_1213.3 [Carica papaya]         (41)
                                                                                      
      Root part of tree:

      /------------------------------------------------------------------- Thecc1EG014141t1 [Theobroma cacao]                   (1)
      |                                                                               
      |                                 /--------------------------------- Gh_A03G0607 [Gossypium hirsutum]                     (30)
      |                                 |                                             
      |---------------100---------------+               /----------------- Gh_D03G0895 [Gossypium hirsutum]                     (37)
      |                                 \------100------+                             
      |                                                 \----------------- Gorai.003G099500.1 [Gossypium raimondii]             (39)
      |                                                                               
      +                                                 /----------------- (88)
      |                                 /-------76------+                             
      |                                 |               \----------------- Eucgr.K02496.1.p [Eucalyptus grandis]                (32)
      |                /-------100------+                                             
      |                |                |               /----------------- Ciclev10020323m [Citrus clementina]                  (18)
      |                |                \------100------+                             
      |                |                                \----------------- orange1.1g026943m [Citrus sinensis]                  (21)
      \-------90-------+                                                              
                       |                                /----------------- Gh_A07G0629 [Gossypium hirsutum]                     (10)
                       |                /------100------+                             
                       |                |               \----------------- Cotton_A_19100_BGI-A2_v1.0 [Gossypium arboreum]      (45)
                       \-------100------+                                             
                                        |               /----------------- Gorai.001G078500.1 [Gossypium raimondii]             (20)
                                        \-------99------+                             
                                                        \----------------- Gh_D07G0698 [Gossypium hirsutum]                     (47)