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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Phylogenetic Tree for OGEM400
| Phylogenetic tree for protein ? help Back to Top |
|---|
Subtree rooted at node 272:
/-------------------- Bostr.0556s0555.1.p [Boechera stricta] (4)
|
| /----- Csa06g011390.1 [Camelina sativa] (9)
| /-100+
/-62-+ | \----- Csa04g018350.1 [Camelina sativa] (13)
| | /-100+
| | | \---------- Csa09g022510.1 [Camelina sativa] (43)
| \-50-+
| | /----- Cagra.27691s0001.1.p [Capsella grandiflora] (62)
/-------63------+ \---100---+
| | \----- Carubv10017737m [Capsella rubella] (89)
| |
| | /----- AT3G29035.1 [Arabidopsis thaliana] (34)
| \---------98--------+
| \----- 484673 [Arabidopsis lyrata] (61)
|
| /----- RrC7533_p1 [Raphanus raphanistrum] (12)
| /---100---+
| | \----- Rsa1.0_00387.1_g00044.1 [Raphanus sativus] (152)
| |
| /-100+ /----- XP_009151811.1 [Brassica rapa] (36)
| | | /-100+
| | | | \----- GSBRNA2T00144521001 [Brassica napus] (72)
| | \-100+
| /-100+ | /----- XP_013595617.1 [Brassica oleracea] (60)
| | | \-100+
/-59-+ | | \----- GSBRNA2T00142881001 [Brassica napus] (84)
| | | |
| | | \-------------------- 676759600 [Sisymbrium irio] (67)
| | |
| | | /----- GSBRNA2T00051194001 [Brassica napus] (23)
| | | /-100+
| | | | \----- XP_013609231.1 [Brassica oleracea] (158)
| | /-100+ /-100+
| | | | | | /----- XP_009111778.1 [Brassica rapa] (69)
| | | | | \-100+
| | | |---100---+ \----- GSBRNA2T00009829001 [Brassica napus] (93)
/----57---+ | | | |
| | | | | | /----- Rsa1.0_00568.1_g00009.1 [Raphanus sativus] (74)
| | | /-100-+ | \---100---+
| | | | | | \----- RrC3365_p1 [Raphanus raphanistrum] (110)
| | | | | |
| | | | | \------------------------- Tp2g17680 [Thellungiella parvula] (58)
| | \-72-+ |
| | | \------------------------------ Thhalv10004583m [Eutrema salsugineum] (81)
| | |
| | \------------------------------------ KFK33777.1 [Arabis alpina] (156)
| |
| \---------------------------------------------- AA53G01090 [Aethionema arabicum] (159)
|
| /----- XP_013613533.1 [Brassica oleracea] (16)
| /-99-+
| | \----- GSBRNA2T00044895001 [Brassica napus] (40)
| /-100+
| | | /----- GSBRNA2T00114310001 [Brassica napus] (123)
| | \-100+
| /-100+ \----- XP_009139909.1 [Brassica rapa] (162)
| | |
| | | /----- RrC3174_p1 [Raphanus raphanistrum] (127)
| /-73-+ \---100---+
| | | \----- Rsa1.0_01302.1_g00005.1 [Raphanus sativus] (151)
| | |
| | \-------------------- 676775128 [Sisymbrium irio] (164)
| |
| | /----- GSBRNA2T00063201001 [Brassica napus] (21)
/-55-+ | /-100+
| | /-58-+ | \----- XP_013590191.1 [Brassica oleracea] (73)
| | | |------100-----+
| | | | | /----- GSBRNA2T00098528001 [Brassica napus] (94)
| | | | \-100+
| | /--64-+ | \----- XP_009125108.1 [Brassica rapa] (116)
| | | | |
| | | | \------------------------- Tp7g02380 [Thellungiella parvula] (124)
| | /-99-+ |
| | | | \------------------------------ Thhalv10027874m [Eutrema salsugineum] (95)
| | | |
| | | \------------------------------------ Thhalv10027479m [Eutrema salsugineum] (141)
| | |
| | | /----- Araha.25334s0001.1.p [Arabidopsis halleri] (29)
| | | /-100+
| | /-82-+ | \----- 494028 [Arabidopsis lyrata] (111)
| | | | /------100-----+
| | | | | \---------- AT5G39610.1 [Arabidopsis thaliana] (133)
--54-+ | | | |
| | | | | /----- Csa11g055650.1 [Camelina sativa] (64)
| | | | | /-78-+
| | | | | | \----- Csa10g046940.1 [Camelina sativa] (174)
| | | \-------89------+ /-100+
| | /-99-+ | | \---------- Csa12g081820.1 [Camelina sativa] (155)
| | | | | /-85-+
| | | | | | | /----- Carubv10005201m [Capsella rubella] (112)
| | | | | | \---100---+
| | | | \-88-+ \----- Cagra.6981s0001.1.p [Capsella grandiflora] (157)
| \-91-+ | |
| | | \-------------------- Bostr.10058s0039.1.p [Boechera stricta] (76)
| | |
| | \---------------------------------------------- KFK33194.1 [Arabis alpina] (170)
| |
| \--------------------------------------------------- AA9G00035 [Aethionema arabicum] (144)
|
| /----- XP_010552836.1 [Tarenaya hassleriana] (125)
\--------------------------100--------------------------+
\----- XP_010528353.1 [Tarenaya hassleriana] (168)
Subtree rooted at node 304:
/-------------------- Bostr.13129s0198.1.p [Boechera stricta] (2)
|
| /---------- Csa08g056700.1 [Camelina sativa] (8)
| |
/-100+ /-100+ /----- Csa20g010110.1 [Camelina sativa] (27)
| | | | |
| | | \-70-+----- Csa13g009710.1 [Camelina sativa] (79)
| | | |
| \-99-+ \----- Csa08g056710.1 [Camelina sativa] (150)
| |
| | /----- Cagra.2925s0018.1.p [Capsella grandiflora] (31)
/-99-+ \---100---+
| | \----- Carubv10001372m [Capsella rubella] (96)
| |
| | /----- Araha.0070s0003.1.p [Arabidopsis halleri] (14)
| | /-100+
| | | \----- 487602 [Arabidopsis lyrata] (26)
| \------100-----+
| \---------- AT5G07680.1 [Arabidopsis thaliana] (53)
|
| /----- XP_009122319.1 [Brassica rapa] (19)
| /-100+
| | \----- GSBRNA2T00042526001 [Brassica napus] (83)
| /-97-+
| | | /----- GSBRNA2T00093660001 [Brassica napus] (98)
| | \-100+
| | \----- XP_013610035.1 [Brassica oleracea] (154)
| |
| | /----- RrC554_p6 [Raphanus raphanistrum] (65)
/----63----+ | /-100+
| | | | \----- Rsa1.0_00492.1_g00005.1 [Raphanus sativus] (92)
| | | |
| | | | /----- GSBRNA2T00071676001 [Brassica napus] (71)
| | /-63-+-66-+-100+
| | | | | \----- XP_009125699.1 [Brassica rapa] (190)
| | | | |
| | | | | /----- XP_013618671.1 [Brassica oleracea] (99)
| | | | \-87-+
| | | | \----- GSBRNA2T00078555001 [Brassica napus] (120)
| |----63---+ |
| | | |--------------- 676744338 [Sisymbrium irio] (180)
| | | |
| | | \--------------- Tp6g35220 [Thellungiella parvula] (161)
| | |
| | \-------------------- Thhalv10014081m [Eutrema salsugineum] (28)
| |
| \------------------------------ KFK25161.1 [Arabis alpina] (47)
|
| /----- AT1G76420.1 [Arabidopsis thaliana] (3)
| /---100---+
| | \----- 476799 [Arabidopsis lyrata] (160)
| |
| /-54-+ /---------- Csa09g081150.1 [Camelina sativa] (15)
| | | |
| | \-100+ /----- Csa07g047980.1 [Camelina sativa] (136)
| | \-100+
| | \----- Csa16g040560.1 [Camelina sativa] (150)
| /-100+
| | | /----- Cagra.0799s0114.1.p [Capsella grandiflora] (48)
| | |------100-----+
| | | \----- Carubv10022061m [Capsella rubella] (130)
| | |
| | \-------------------- Bostr.20129s0079.1.p [Boechera stricta] (163)
| |
| |------------------------- Tp5g31580 [Thellungiella parvula] (6)
| |
| | /----- XP_009106303.1 [Brassica rapa] (7)
| | /-90-+
| | | \----- GSBRNA2T00146607001 [Brassica napus] (11)
| | /-81-+
| | | | /----- GSBRNA2T00147768001 [Brassica napus] (114)
| | | \-99-+
| |----80---+ \----- XP_013588851.1 [Brassica oleracea] (115)
| | |
| | | /----- Rsa1.0_07698.1_g00001.1 [Raphanus sativus] (37)
| | \---100---+
| | \----- RrC5017_p2 [Raphanus raphanistrum] (113)
| |
| | /----- XP_010539771.1 [Tarenaya hassleriana] (10)
| |---------86--------+
| /-60-+ \----- XP_010537223.1 [Tarenaya hassleriana] (170)
| | |
| | |------------------------- KFK42062.1 [Arabis alpina] (18)
| | |
| | | /----- XP_013619595.1 [Brassica oleracea] (39)
| | | /-100+
| | | | \----- GSBRNA2T00012468001 [Brassica napus] (90)
| | | /-100+
| | | | | /----- XP_009128177.1 [Brassica rapa] (129)
| | | | \-100+
| | |----85---+ \----- GSBRNA2T00083095001 [Brassica napus] (148)
| | | |
| | | | /----- RrC9089_p1 [Raphanus raphanistrum] (78)
| | | \---100---+
| | | \----- Rsa1.0_02385.1_g00001.1 [Raphanus sativus] (145)
| | |
| | |------------------------- Csa09g081160.1 [Camelina sativa] (42)
| | |
| | |------------------------- Thhalv10019493m [Eutrema salsugineum] (44)
| | |
| | |------------------------- AA31G00322 [Aethionema arabicum] (117)
| /--55-+ |
| | | \------------------------- 676741388 [Sisymbrium irio] (166)
| | |
| | | /----- Neem_29819_f_1 [Azadirachta indica] (20)
| | | /-100+
| | | | \----- Neem_7002_f_4 [Azadirachta indica] (68)
| | | /----66---+
| | | | | /----- orange1.1g016283m [Citrus sinensis] (35)
| | | | \-100+
| | | | \----- Ciclev10001403m [Citrus clementina] (142)
| | | |
| | | | /----- EcC003993.10 [Eucalyptus camaldulensis] (30)
/-100+ | | |------100-----+
| | | | | \----- Eucgr.F03588.1.p [Eucalyptus grandis] (82)
| | | | |
| | | | | /----- Gorai.002G113300.1 [Gossypium raimondii] (63)
| | | | | /-100+
| | | | | | \----- Gh_D01G0847 [Gossypium hirsutum] (85)
| |-56-+ | | /-100+
| | | | | | | /----- Gh_A01G0819 [Gossypium hirsutum] (70)
| | | \----59---+ | \-100+
| | | | | \----- Cotton_A_12683_BGI-A2_v1.0 [Gossypium arboreum] (169)
| | | |-66-+
| | | | | /----- Cotton_A_04612_BGI-A2_v1.0 [Gossypium arboreum] (88)
| | | | | /-100+
| | | | | | \----- Gh_A05G1526 [Gossypium hirsutum] (140)
| | | | \-100+
| | | | | /----- Gorai.009G186000.1 [Gossypium raimondii] (135)
| | | | \-100+
| | | | \----- Gh_D05G1697 [Gossypium hirsutum] (147)
| | | |
| | | |-------------------- evm.model.supercontig_286.12 [Carica papaya] (143)
| | | |
| | | \-------------------- Thecc1EG034835t1 [Theobroma cacao] (149)
| | |
| | \------------------------------------ EcC052965.10 [Eucalyptus camaldulensis] (153)
| |
| |----------------------------------------- (272)
| |
| | /---------- XP_010546158.1 [Tarenaya hassleriana] (24)
| | |
| |--------------97--------------+ /----- XP_010523106.1 [Tarenaya hassleriana] (54)
| | \-78-+
| | \----- XP_010547773.1 [Tarenaya hassleriana] (165)
| |
| | /----- Ciclev10012093m [Citrus clementina] (25)
| | /-100+
| | | \----- orange1.1g018950m [Citrus sinensis] (139)
| | /------100-----+
| | | | /----- Neem_35472_f_1 [Azadirachta indica] (38)
| | | \-100+
| | | \----- Neem_3103_f_14 [Azadirachta indica] (52)
| | |
| | | /----- Gh_A11G0633 [Gossypium hirsutum] (56)
| | | /-93-+
/-100+ |-------84------+ | \----- Cotton_A_15474_BGI-A2_v1.0 [Gossypium arboreum] (80)
| | | | /-100+
| | | | | | /----- Gh_D11G0743 [Gossypium hirsutum] (172)
| | | | | \-97-+
| | | | /-89-+ \----- Gorai.007G079900.1 [Gossypium raimondii] (173)
| | | | | |
| | | \-84-+ \--------------- Thecc1EG018621t1 [Theobroma cacao] (167)
| | | |
| | | \-------------------- evm.model.supercontig_14.101 [Carica papaya] (100)
| | |
| | | /----- Eucgr.I01958.1.p [Eucalyptus grandis] (41)
| | |----------------100----------------+
| | | \----- EcC022004.10 [Eucalyptus camaldulensis] (140)
| | |
| | | /----- orange1.1g017827m [Citrus sinensis] (45)
| | | /-100+
| | | | \----- Ciclev10020480m [Citrus clementina] (118)
| | | /---100---+
| | | | | /----- Neem_34778_f_1 [Azadirachta indica] (55)
| | | | \-100+
| | | | \----- Neem_12856_f_1 [Azadirachta indica] (131)
| | | |
/-54-+ | | | /----- Cotton_A_13395_BGI-A2_v1.0 [Gossypium arboreum] (86)
| | | |---------97---------+ /-95-+
| | | | | | \----- Gh_A12G1620 [Gossypium hirsutum] (132)
| | | | | /-100+
| | | | | | | /----- Gh_D12G1761 [Gossypium hirsutum] (97)
| | | | | | \-100+
| | | | \-100+ \----- Gorai.008G194400.1 [Gossypium raimondii] (120)
| | | | |
| | | | \--------------- Thecc1EG014073t1 [Theobroma cacao] (122)
| | | |
| | | |----------------------------------------- Eucgr.B00529.1.p [Eucalyptus grandis] (50)
| | | |
| | | |----------------------------------------- AA44G00040 [Aethionema arabicum] (59)
| | | |
| | | |----------------------------------------- evm.model.supercontig_111.22 [Carica papaya] (77)
| | | |
| | | |----------------------------------------- EcC037763.10 [Eucalyptus camaldulensis] (134)
| | | |
/-83-+ | | \----------------------------------------- XP_010528773.1 [Tarenaya hassleriana] (171)
| | | |
| | | \---------------------------------------------- AA5G00148 [Aethionema arabicum] (17)
| | |
| | \--------------------------------------------------- KFK27900.1 [Arabis alpina] (33)
| |
| | /----- Csa02g068390.1 [Camelina sativa] (46)
| | /-100+
| | | \----- Csa11g097230.1 [Camelina sativa] (57)
| | /-100+
| | | \---------- Csa18g034760.1 [Camelina sativa] (51)
| | /-96-+
--100+ | | | /----- Cagra.0542s0037.1.p [Capsella grandiflora] (137)
| | | \---100---+
| | /-100+ \----- Carubv10026752m [Capsella rubella] (160)
| | | |
| | | \-------------------- Bostr.26833s0095.1.p [Boechera stricta] (66)
| \--------------100-------------+
| | /----- 496302 [Arabidopsis lyrata] (49)
| | |
| \---------79--------+----- AT5G61430.1 [Arabidopsis thaliana] (91)
| |
| \----- Araha.1448s0011.1.p [Arabidopsis halleri] (119)
|
\------------------------------------------------------------- Thhalv10004550m [Eutrema salsugineum] (138)
Root part of tree:
/------------------------------------------------------------------ RrC9905_p1 [Raphanus raphanistrum] (1)
|
|------------------------------------------------------------------ Rsa1.0_00166.1_g00017.1 [Raphanus sativus] (87)
|
| /----------------------------------------------- (304)
| |
| | /--------- XP_013595819.1 [Brassica oleracea] (5)
| | |
+ | /---100---+--------- GSBRNA2T00020292001 [Brassica napus] (126)
| | | |
| /---100---+ | \--------- XP_009136471.1 [Brassica rapa] (146)
| | | /---100--+
| | | | | /--------- Rsa1.0_07584.1_g00001.1 [Raphanus sativus] (110)
| | | | \---100---+
| | | /---100---+ \--------- RrC422_p5 [Raphanus raphanistrum] (121)
| | | | |
\---100--+ \---95---+ \---------------------------- 676729696 [Sisymbrium irio] (128)
| |
| \-------------------------------------- Tp2g24630 [Thellungiella parvula] (75)
|
| /------------------- XP_013618540.1 [Brassica oleracea] (22)
| |
\-----------------100-----------------+ /--------- XP_009130171.1 [Brassica rapa] (32)
\---100---+
\--------- GSBRNA2T00075573001 [Brassica napus] (130)
|
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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