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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Phylogenetic Tree for OGEM454
| Phylogenetic tree for protein ? help Back to Top |
|---|
Subtree rooted at node 249:
/---------- AT1G60880.1 [Arabidopsis thaliana] (2)
|
/------100-----+ /----- Araha.11209s0002.1.p [Arabidopsis halleri] (35)
| \-100+
| \----- 475244 [Arabidopsis lyrata] (42)
|
| /--------------- Carubv10021715m [Capsella rubella] (17)
/-91-+ |
| | | /----- Csa16g052720.1 [Camelina sativa] (36)
| | /-100+ /-100+
| | | | | \----- Csa09g095380.1 [Camelina sativa] (58)
| | | \-100+
| \-97-+ \---------- Csa07g062030.1 [Camelina sativa] (120)
| |
/--82-+ \-------------------- Bostr.10040s0123.1.p [Boechera stricta] (140)
| |
| | /----- Csa09g095430.1 [Camelina sativa] (20)
| | /-91-+
| | | \----- Csa16g052790.1 [Camelina sativa] (33)
| | /-100+
| | | \---------- Csa07g062070.1 [Camelina sativa] (22)
/-80-+ \------99------+
| | | /----- Carubv10021738m [Capsella rubella] (63)
| | \---100---+
| | \----- Cagra.1216s0008.1.p [Capsella grandiflora] (96)
| |
| | /----- 475240 [Arabidopsis lyrata] (29)
| \--------------100-------------+
| \----- AT1G60920.1 [Arabidopsis thaliana] (121)
|
| /----- 676776274 [Sisymbrium irio] (9)
| /------59------+
| | \----- 676776276 [Sisymbrium irio] (93)
| |
| | /----- RrC688_p6 [Raphanus raphanistrum] (24)
/-61-+ /----53---+ /---100---+
| | | | | \----- Rsa1.0_02758.1_g00002.1 [Raphanus sativus] (46)
| | | | |
| | | | | /----- XP_009123497.1 [Brassica rapa] (40)
| | | \-100+ |
| | | | /-100+----- GSBRNA2T00014621001 [Brassica napus] (60)
| | | | | |
| | | \-100+ \----- XP_009123499.1 [Brassica rapa] (141)
| | | |
| | | \---------- XP_013610889.1 [Brassica oleracea] (126)
| | |
| | | /----- XP_013607713.1 [Brassica oleracea] (10)
| | | /-99-+
| \----60----+ | \----- GSBRNA2T00069732001 [Brassica napus] (116)
| | /-100+
| | | | /----- XP_009113240.1 [Brassica rapa] (119)
/-57-+ | | \-100+
| | | /-100+ \----- GSBRNA2T00070528001 [Brassica napus] (134)
| | | | |
| | | | | /----- RrC6615_p2 [Raphanus raphanistrum] (23)
| | | | \---100---+
| | | /-86-+ \----- Rsa1.0_03102.1_g00002.1 [Raphanus sativus] (76)
| | | | |
| | | | | /----- Tp2g03770 [Thellungiella parvula] (110)
| | | | \------100-----+
| | \-86-+ \----- Tp2g03710 [Thellungiella parvula] (118)
| | |
| | | /----- Thhalv10023871m [Eutrema salsugineum] (27)
| | \---------99--------+
| | \----- Thhalv10023813m [Eutrema salsugineum] (142)
/-70-+ |
| | \---------------------------------------------- XP_010552915.1 [Tarenaya hassleriana] (55)
| |
| | /----- XP_010548848.1 [Tarenaya hassleriana] (39)
| | /---100---+
| | | \----- XP_010548849.1 [Tarenaya hassleriana] (129)
| | |
| | /-84-+ /----- XP_010535252.1 [Tarenaya hassleriana] (48)
| | | | /-100+
| | | | | \----- XP_010535251.1 [Tarenaya hassleriana] (64)
| | /-97-+ \-100+
| | | | \---------- XP_010535254.1 [Tarenaya hassleriana] (127)
| | | |
| \------------88-----------+ \-------------------- XP_010547838.1 [Tarenaya hassleriana] (78)
| |
| | /----- XP_010547911.1 [Tarenaya hassleriana] (135)
| \--------100--------+
| \----- XP_010547925.1 [Tarenaya hassleriana] (136)
|
| /----- GSBRNA2T00143077001 [Brassica napus] (5)
| /-100+
| | \----- XP_013596955.1 [Brassica oleracea] (145)
| /-95-+
| | \---------- Rsa1.0_00818.1_g00004.1 [Raphanus sativus] (56)
| /-94-+
| | | /----- GSBRNA2T00144356001 [Brassica napus] (81)
| | \---100---+
| | \----- XP_009151734.1 [Brassica rapa] (124)
| |
| | /----- GSBRNA2T00143104001 [Brassica napus] (13)
| /---------100--------+ /-100+
| | | | \----- XP_013594963.1 [Brassica oleracea] (98)
| | | /-100+
| | | | | /----- XP_009151512.1 [Brassica rapa] (72)
| | | | \-100+
| | \-99-+ \----- GSBRNA2T00144321001 [Brassica napus] (110)
| | |
| | | /----- RrC49560_p1 [Raphanus raphanistrum] (41)
| | \---100---+
| | \----- Rsa1.0_00362.1_g00007.1 [Raphanus sativus] (117)
| |
| | /------------------------------ Tp6g06330 [Thellungiella parvula] (6)
| | |
| | | /----- Csa11g078300.1 [Camelina sativa] (18)
| | | /-86-+
| | | | \----- Csa02g035210.1 [Camelina sativa] (83)
| | | /-97-+
| | | | | /----- Csa03g060500.1 [Camelina sativa] (74)
| |----68----+ | \-89-+
| | | /-97-+ \----- Csa02g035060.1 [Camelina sativa] (91)
| | | | |
| | | /-83-+ \--------------- Carubv10028105m [Capsella rubella] (89)
| | | | |
| | | | \-------------------- Bostr.15774s0044.1.p [Boechera stricta] (44)
| | | |
| | \-91-+ /----- AT5G38620.1 [Arabidopsis thaliana] (59)
| | | /-100+
| | | | \----- AT5G49420.1 [Arabidopsis thaliana] (82)
/-60-+ | \------92------+
| | | | /----- Araha.3709s0001.1.p [Arabidopsis halleri] (125)
| | | \-60-+
| | | \----- AT5G49490.1 [Arabidopsis thaliana] (130)
| | |
| | | /----- 676748812 [Sisymbrium irio] (8)
| | | /-----------92-----------+
| | | | \----- 676707426 [Sisymbrium irio] (80)
| | | |
| | | | /----- Rsa1.0_00769.1_g00002.1 [Raphanus sativus] (11)
| | | | /-100+
| | | | | \----- Rsa1.0_01854.1_g00005.1 [Raphanus sativus] (131)
| | | | /-80-+
| | | | | | /----- Rsa1.0_07319.1_g00001.1 [Raphanus sativus] (65)
| | | | | \-53-+
| | | | /-56-+ \----- Rsa1.0_00134.1_g00010.1 [Raphanus sativus] (90)
| | | | | |
| | | | | \--------------- RrC5633_p4 [Raphanus raphanistrum] (97)
| | | /--87-+ |
| | | | | | /----- RrC12231_p5 [Raphanus raphanistrum] (12)
| | | | | /-97-+ /-64-+
| | | | | | | | \----- RrC8572_p1 [Raphanus raphanistrum] (190)
| | | | | | | /-52-+
| | | | | | | | \---------- Rsa1.0_00887.1_g00007.1 [Raphanus sativus] (54)
| | | | | | \-64-+
| | | | | | \--------------- RrC38630_p1 [Raphanus raphanistrum] (70)
| | | | | |
| | | | | | /----- XP_009148220.1 [Brassica rapa] (53)
| | /-63-+ | | | /-100+
| | | | | \-100+ | \----- GSBRNA2T00156356001 [Brassica napus] (68)
| | | | | | /-59-+
| | | | | | | | /----- XP_013588961.1 [Brassica oleracea] (69)
| | | | | | | \-100+
| | | | | | /-99-+ \----- GSBRNA2T00096909001 [Brassica napus] (113)
| | | | | | | |
| | | | | | | | /----- GSBRNA2T00039065001 [Brassica napus] (77)
| | | | | | | \---100---+
| | | | | \-79-+ \----- XP_013588993.1 [Brassica oleracea] (140)
| | | |-90-+ |
| | | | | | /----- XP_013588958.1 [Brassica oleracea] (67)
| | | | | \------100-----+
| | | | | \----- GSBRNA2T00093550001 [Brassica napus] (95)
| | | | |
| | | | | /---------- XP_009107574.1 [Brassica rapa] (37)
| | | | | |
| | | | | /-68-+ /----- XP_009107578.1 [Brassica rapa] (47)
| | | | | | \-100+
--78-+ | | | | /-53-+ \----- GSBRNA2T00091115001 [Brassica napus] (57)
| | | | | | |
| | | | | | \--------------- GSBRNA2T00091140001 [Brassica napus] (122)
| | | | | /-53-+
| | | | | | | /----- GSBRNA2T00052939001 [Brassica napus] (51)
| | | | | | \------86------+
| | | | | /-100+ \----- GSBRNA2T00127904001 [Brassica napus] (52)
| | | | | | |
| | | | | | | /----- GSBRNA2T00066948001 [Brassica napus] (92)
| | | | | | \--------100--------+
| | | | \-100-+ \----- XP_013601021.1 [Brassica oleracea] (160)
| \----77---+ | |
| | | | /---------- RrC13082_p1 [Raphanus raphanistrum] (43)
| | | | |
| | | \--------100--------+ /----- Rsa1.0_37341.1_g00001.1 [Raphanus sativus] (130)
| | | \-97-+
| | | \----- Rsa1.0_00072.1_g00017.1 [Raphanus sativus] (120)
| | |
| | | /----- Thhalv10029235m [Eutrema salsugineum] (15)
| | | /-100+
| | | | \----- Thhalv10029380m [Eutrema salsugineum] (88)
| | | /-100+
| | | | \---------- Thhalv10029256m [Eutrema salsugineum] (144)
| | |------------51-----------+
| | | \--------------- Tp6g07320 [Thellungiella parvula] (111)
| | |
| | | /----- 676766586 [Sisymbrium irio] (31)
| | | /----93---+
| | | | \----- 676736438 [Sisymbrium irio] (73)
| | | |
| | |------------82-----------+ /---------- Rsa1.0_00095.1_g00022.1 [Raphanus sativus] (45)
| | | | |
| | | \-97-+ /----- XP_009139672.1 [Brassica rapa] (50)
| | | \-66-+
| | | \----- GSBRNA2T00070348001 [Brassica napus] (128)
| | |
| | \----------------------------------------- Tp1g36460 [Thellungiella parvula] (85)
| |
| | /---------- KFK26164.1 [Arabis alpina] (28)
| | |
| \----------------100----------------+ /----- KFK39675.1 [Arabis alpina] (170)
| \-61-+
| \----- KFK26115.1 [Arabis alpina] (137)
|
| /--------------- Csa12g057290.1 [Camelina sativa] (7)
| |
| | /----- Cagra.1718s0014.1.p [Capsella grandiflora] (38)
\----------------------97---------------------+ /-100+
| | \----- Carubv10006209m [Capsella rubella] (62)
\-95-+
\---------- Bostr.0597s0065.1.p [Boechera stricta] (115)
Subtree rooted at node 269:
/------------------------------------ (249)
|
| /----- GSBRNA2T00080930001 [Brassica napus] (3)
| /-95-+
| | \----- XP_013608535.1 [Brassica oleracea] (66)
| /-97-+
| | | /----- XP_009122928.1 [Brassica rapa] (86)
| | \-100+
| /-95-+ \----- GSBRNA2T00136331001 [Brassica napus] (138)
| | |
| | | /----- RrC13371_p1 [Raphanus raphanistrum] (4)
/-97-+ /-59-+ \---100---+
| | | | \----- Rsa1.0_11288.1_g00002.1 [Raphanus sativus] (139)
| | | |
| | /-94-+ \-------------------- 676706524 [Sisymbrium irio] (94)
| | | |
| | | \------------------------- Tp5g22450 [Thellungiella parvula] (14)
| |--80-+
| | |------------------------------ Thhalv10023175m [Eutrema salsugineum] (21)
/-94-+ | |
| | | \------------------------------ Thhalv10015623m [Eutrema salsugineum] (99)
| | |
| | \------------------------------------ KFK25586.1 [Arabis alpina] (49)
| |
| | /---------- AT1G46408.1 [Arabidopsis thaliana] (100)
/-63-+ | |
| | \--------------68--------------+ /----- AT5G04640.1 [Arabidopsis thaliana] (133)
| | \-72-+
| | \----- Bostr.26959s0207.1.p [Boechera stricta] (143)
/-86-+ |
| | \---------------------------------------------- Carubv10021917m [Capsella rubella] (84)
| |
| | /----- Carubv10022197m [Capsella rubella] (61)
| \----------------------72---------------------+
/-91-+ \----- Carubv10025699m [Capsella rubella] (87)
| |
| | /----- Csa05g081500.1 [Camelina sativa] (25)
| | /-100+
| | | \----- Csa05g041620.1 [Camelina sativa] (180)
--96-+ \----------------------97---------------------+
| \---------- Csa07g032730.1 [Camelina sativa] (34)
|
| /----- Csa16g024140.1 [Camelina sativa] (16)
\---------------------------93--------------------------+
\----- Csa05g079830.1 [Camelina sativa] (123)
Root part of tree:
/------------------------------------------------------------------ Csa06g021890.1 [Camelina sativa] (1)
|
| /---------------------------------------- (269)
| |
| | /------------- Csa04g034380.1 [Camelina sativa] (19)
| /-----71-----+ /-----100----+
| | | | \------------- Csa04g034390.1 [Camelina sativa] (132)
| | \------95-----+
| | | /------------- Csa04g034010.1 [Camelina sativa] (32)
| | \-----99-----+
| | \------------- Csa04g033780.1 [Camelina sativa] (114)
| |
+-----100----+ /------------- Csa09g050960.1 [Camelina sativa] (26)
| | |
| | /-----51-----+------------- Csa09g051540.1 [Camelina sativa] (75)
| | | |
| | /------99-----+ \------------- Csa09g050990.1 [Camelina sativa] (150)
| | | |
| \-----76-----+ \-------------------------- Csa07574s010.1 [Camelina sativa] (30)
| |
| \---------------------------------------- Csa09g048810.1 [Camelina sativa] (112)
|
| /------------- Csa06g022610.1 [Camelina sativa] (71)
\-------------------------100------------------------+
\------------- Csa06g022440.1 [Camelina sativa] (79)
|
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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