Subtree rooted at node 88:

                                                                    /----- RrC5040_p1 [Raphanus raphanistrum]                     (2)
                                                          /---100---+                 
                                                          |         \----- Rsa1.0_02010.1_g00001.1 [Raphanus sativus]             (6)
                                                          |                           
                                /-----------100-----------+         /----- XP_013588690.1 [Brassica oleracea]                     (22)
                                |                         |    /-100+                 
                                |                         |    |    \----- GSBRNA2T00118026001 [Brassica napus]                   (40)
                                |                         \-100+                      
                                |                              |    /----- GSBRNA2T00124312001 [Brassica napus]                   (24)
                                |                              \-100+                 
                                |                                   \----- XP_009105004.1 [Brassica rapa]                         (31)
                                |                                                     
                                |                                   /----- RrC1704_p1 [Raphanus raphanistrum]                     (3)
                                |                         /---100---+                 
                                |                         |         \----- Rsa1.0_00012.1_g00021.1 [Raphanus sativus]             (35)
                                |                         |                           
                                |    /---------100--------+         /----- XP_013588933.1 [Brassica oleracea]                     (23)
                                |    |                    |    /-100+                 
                                |    |                    |    |    \----- GSBRNA2T00071959001 [Brassica napus]                   (51)
                                |    |                    \-100+                      
                                |    |                         |    /----- XP_009105473.1 [Brassica rapa]                         (34)
                           /-100+    |                         \-100+                 
                           |    |    |                              \----- GSBRNA2T00101964001 [Brassica napus]                   (43)
                           |    |    |                                                
                           |    |    |                              /----- 476056 [Arabidopsis lyrata]                            (5)
                           |    |    |                         /-99-+                 
                           |    |    |                         |    \----- AT1G69310.1 [Arabidopsis thaliana]                     (29)
                           |    |    |         /-------73------+                      
                           |    |    |         |               \---------- Araha.4512s0002.1.p [Arabidopsis halleri]              (15)
                           |    |    |         |                                      
                           |    |    |         |                    /----- Csa05g086010.1 [Camelina sativa]                       (17)
                           |    |    |         |               /-100+                 
                           |    |    |         |               |    \----- Csa07g035970.1 [Camelina sativa]                       (49)
                           |    |    |    /-100+          /-76-+                      
                           |    |    |    |    |          |    \---------- Csa16g030620.1 [Camelina sativa]                       (45)
                           |    |    |    |    |    /--99-+                           
                           |    |    |    |    |    |     |         /----- Carubv10020765m [Capsella rubella]                     (32)
                           |    \-84-+    |    |    |     \---100---+                 
                           |         |-53-+    \-53-+               \----- Cagra.0537s0016.1.p [Capsella grandiflora]             (38)
                           |         |    |         |                                 
                           |         |    |         \--------------------- Bostr.10273s0439.1.p [Boechera stricta]                (48)
                     /-100-+         |    |                                           
                     |     |         |    \------------------------------- Thhalv10018976m [Eutrema salsugineum]                  (46)
                     |     |         |                                                
                     |     |         |------------------------------------ 676764350 [Sisymbrium irio]                            (11)
                     |     |         |                                                
                     |     |         |                              /----- XP_009127720.1 [Brassica rapa]                         (12)
                     |     |         |                         /-99-+                 
                     |     |         |                         |    \----- GSBRNA2T00096399001 [Brassica napus]                   (53)
                     |     |         |                    /-100+                      
                     |     |         |                    |    |    /----- GSBRNA2T00013428001 [Brassica napus]                   (13)
                     |     |         |                    |    \-100+                 
                /-100+     |         |---------100--------+         \----- XP_013616492.1 [Brassica oleracea]                     (47)
                |    |     |         |                    |                           
                |    |     |         |                    |         /----- Rsa1.0_00829.1_g00003.1 [Raphanus sativus]             (33)
                |    |     |         |                    \---100---+                 
                |    |     |         |                              \----- RrC6151_p1 [Raphanus raphanistrum]                     (41)
                |    |     |         |                                                
                |    |     |         \------------------------------------ Tp5g24370 [Thellungiella parvula]                      (20)
                |    |     |                                                          
           /-88-+    |     \---------------------------------------------- AA47G00031 [Aethionema arabicum]                       (42)
           |    |    |                                                                
           |    |    \---------------------------------------------------- XP_010551398.1 [Tarenaya hassleriana]                  (37)
           |    |                                                                     
           |    |                                              /---------- EcS505229.10 [Eucalyptus camaldulensis]                (10)
           |    |                                              |                      
      --71-+    |                                         /-74-+    /----- Eucgr.G02459.1.p [Eucalyptus grandis]                  (28)
           |    |                                         |    \-100+                 
           |    \--------------------82-------------------+         \----- EcC050275.30 [Eucalyptus camaldulensis]                (44)
           |                                              |                           
           |                                              \--------------- Eucgr.B03165.1.p [Eucalyptus grandis]                  (19)
           |                                                                          
           \-------------------------------------------------------------- evm.model.supercontig_1.104 [Carica papaya]            (4)
                                                                                      
      Root part of tree:

      /------------------------------------------------------------------- Thecc1EG011578t1 [Theobroma cacao]                     (1)
      |                                                                               
      |                                 /--------------------------------- Gorai.005G144500.1 [Gossypium raimondii]               (7)
      |                                 |                                             
      |                                 |                     /----------- Gh_A03G2109 [Gossypium hirsutum]                       (25)
      |---------------100---------------+          /----100---+                       
      |                                 |          |          \----------- Cotton_A_32130_BGI-A2_v1.0 [Gossypium arboreum]        (39)
      |                                 \----93----+                                  
      |                                            \---------------------- Gh_D02G1291 [Gossypium hirsutum]                       (36)
      |                                                                               
      |                                 /--------------------------------- (88)
      |                                 |                                             
      +                     /-----97----+          /---------------------- Neem_2064_f_1 [Azadirachta indica]                     (16)
      |                     |           |          |                                  
      |                     |           \----100---+          /----------- orange1.1g045509m [Citrus sinensis]                    (21)
      |                     |                      \----100---+                       
      |                     |                                 \----------- Ciclev10032283m [Citrus clementina]                    (27)
      |          /----83----+                                                         
      |          |          |                                 /----------- Gh_A12G1488 [Gossypium hirsutum]                       (8)
      |          |          |                      /----63----+                       
      |          |          |                      |          \----------- Cotton_A_06179_BGI-A2_v1.0 [Gossypium arboreum]        (26)
      |          |          \----------100---------+                                  
      |          |                                 |          /----------- Gh_D12G1614 [Gossypium hirsutum]                       (14)
      \----78----+                                 \----100---+                       
                 |                                            \----------- Gorai.008G178100.1 [Gossypium raimondii]               (50)
                 |                                                                    
                 |                                            /----------- Gh_D13G0837 [Gossypium hirsutum]                       (9)
                 |                                 /----99----+                       
                 |                                 |          \----------- Gorai.013G092300.1 [Gossypium raimondii]               (52)
                 \----------------97---------------+                                  
                                                   |          /----------- Gh_A13G0715 [Gossypium hirsutum]                       (18)
                                                   \----65----+                       
                                                              \----------- Cotton_A_29496_BGI-A2_v1.0 [Gossypium arboreum]        (30)