 |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Phylogenetic Tree for OGEM580
| Phylogenetic tree for protein ? help Back to Top |
|---|
Subtree rooted at node 187:
/----- orange1.1g008078m [Citrus sinensis] (7)
/-100+
| \----- Ciclev10000693m [Citrus clementina] (54)
/---------------------100---------------------+
| \---------- Neem_3752_f_1 [Azadirachta indica] (61)
|
| /----- GSBRNA2T00099262001 [Brassica napus] (8)
| /-100+
| | \----- XP_009104599.1 [Brassica rapa] (87)
| /-100+
| | | /----- XP_013587957.1 [Brassica oleracea] (47)
| | \-85-+
| /-100+ \----- GSBRNA2T00131843001 [Brassica napus] (65)
| | |
| /-81-+ \--------------- 676715028 [Sisymbrium irio] (128)
| | |
| /-99-+ \-------------------- Tp5g33010 [Thellungiella parvula] (126)
| | |
| | \------------------------- Thhalv10018331m [Eutrema salsugineum] (21)
| |
| | /----- GSBRNA2T00147919001 [Brassica napus] (13)
| /--93-+ /-100+
| | | | \----- XP_013590621.1 [Brassica oleracea] (110)
| | | /-100+
| | | | \---------- XP_009106427.1 [Brassica rapa] (23)
| | \------100-----+
| | | /----- RrC15780_p1 [Raphanus raphanistrum] (44)
| | \---100---+
/-69-+ | \----- Rsa1.0_03073.1_g00005.1 [Raphanus sativus] (121)
| | |
| | | /----- Csa07g050520.1 [Camelina sativa] (14)
| | | /-86-+
| | | | \----- Csa16g042100.1 [Camelina sativa] (115)
| | /-90-+ /-100+
| | | | | \---------- Csa09g084650.1 [Camelina sativa] (51)
| | | | /-100+
| | | | | | /----- Carubv10019991m [Capsella rubella] (36)
| | | | | \---100---+
| | | | /-96-+ \----- Cagra.0096s0050.1.p [Capsella grandiflora] (80)
| | | | | |
| | | | | \-------------------- Bostr.20129s0222.1.p [Boechera stricta] (180)
| | | | /-97-+
| | | | | | /----- 895674 [Arabidopsis lyrata] (38)
| | /-83-+ | | \--------100--------+
| | | | | | \----- AT1G77850.1 [Arabidopsis thaliana] (43)
| | | | \--67-+
| | | | | /----- Araha.13488s0001.1.p [Arabidopsis halleri] (120)
| | | | | |
| | | | \-----------100----------+----- Cagra.24523s0002.1.p [Capsella grandiflora] (111)
--82-+ | /-86-+ | |
| | | | | \----- Csa02164s010.1 [Camelina sativa] (123)
| | | | |
| | | | \----------------------------------------- AA31G00188 [Aethionema arabicum] (91)
| \-82-+ |
| | \---------------------------------------------- XP_010539617.1 [Tarenaya hassleriana] (68)
| |
| \--------------------------------------------------- evm.model.supercontig_49.122 [Carica papaya] (58)
|
| /----- Gh_A05G1991 [Gossypium hirsutum] (10)
| /-100+
| | \----- Cotton_A_16138_BGI-A2_v1.0 [Gossypium arboreum] (94)
| |
| /---100---+---------- Gorai.009G241900.1 [Gossypium raimondii] (45)
| | |
| | \---------- Gh_D05G3805 [Gossypium hirsutum] (55)
| |
| /-89-+ /---------- Gorai.010G046000.1 [Gossypium raimondii] (11)
| | | |
| | | /-91-+ /----- Gh_A06G0332 [Gossypium hirsutum] (88)
| | | | \-100+
\----------------100----------------+ \-100+ \----- Cotton_A_18446_BGI-A2_v1.0 [Gossypium arboreum] (95)
| |
| \--------------- Gh_D06G0360 [Gossypium hirsutum] (122)
|
\------------------------- Thecc1EG035002t1 [Theobroma cacao] (125)
Subtree rooted at node 213:
/----- Csa11g013350.1 [Camelina sativa] (2)
|
/-100+----- Csa10g012470.1 [Camelina sativa] (39)
| |
| \----- Csa12g017140.1 [Camelina sativa] (49)
/-87-+
| | /----- Carubv10004220m [Capsella rubella] (75)
| \-100+
/-100+ \----- Cagra.1744s0020.1.p [Capsella grandiflora] (98)
| |
| \--------------- Bostr.7867s0859.1.p [Boechera stricta] (37)
/-100+
| | /----- 913475 [Arabidopsis lyrata] (3)
| \------91------+
| \----- AT4G30080.1 [Arabidopsis thaliana] (9)
|
| /----- GSBRNA2T00130264001 [Brassica napus] (17)
| /-100+
| | \----- XP_013594669.1 [Brassica oleracea] (92)
| /-100+
| | | /----- XP_009128129.1 [Brassica rapa] (34)
| | \-100+
| /-100+ \----- GSBRNA2T00076844001 [Brassica napus] (67)
| | |
| | | /----- RrC1226_p4 [Raphanus raphanistrum] (22)
| | \---100---+
| | \----- Rsa1.0_00897.1_g00011.1 [Raphanus sativus] (84)
/-50-+ |
| |-100+ /----- GSBRNA2T00086041001 [Brassica napus] (30)
| | | /-100+
| | | | \----- XP_013593026.1 [Brassica oleracea] (76)
| | | /-100+
| | | | | /----- XP_009137888.1 [Brassica rapa] (63)
| | | | \-89-+
| | \-100+ \----- GSBRNA2T00044758001 [Brassica napus] (110)
| | |
| | | /----- RrC5488_p1 [Raphanus raphanistrum] (160)
/-100-+ | \---100---+
| | | \----- Rsa1.0_00124.1_g00036.1 [Raphanus sativus] (116)
| | |
| | |------------------------- 676753500 [Sisymbrium irio] (48)
| | |
| | | /----- Tp7g27920 [Thellungiella parvula] (71)
/-93-+ | \--------100--------+
| | | \----- Tp7g27930 [Thellungiella parvula] (86)
| | |
| | \------------------------------ Thhalv10024601m [Eutrema salsugineum] (130)
/-93-+ |
| | \------------------------------------ AA102G00149 [Aethionema arabicum] (25)
| |
| | /----- XP_010558677.1 [Tarenaya hassleriana] (66)
/-54-+ \----------------100----------------+
| | \----- XP_010554545.1 [Tarenaya hassleriana] (114)
| |
| | /----- (187)
| \-------------------100------------------+
| \----- Eucgr.F04380.1.p [Eucalyptus grandis] (127)
|
| /----- Ciclev10030860m [Citrus clementina] (18)
| /-100+
| | \----- orange1.1g005482m [Citrus sinensis] (70)
|-------------------100------------------+
| | /----- Neem_17933_f_1 [Azadirachta indica] (28)
| \-100+
| \----- Neem_3929_f_1 [Azadirachta indica] (118)
|
| /----- Gh_D04G0030 [Gossypium hirsutum] (24)
| /-100+
/-54-+ | \----- Gorai.012G004800.1 [Gossypium raimondii] (53)
| | /---100---+
| | | | /----- Cotton_A_06107_BGI-A2_v1.0 [Gossypium arboreum] (40)
| | | \-100+
| | | \----- Gh_A05G3576 [Gossypium hirsutum] (85)
| | |
| | /-100+ /---------- Gh_D10G2093 [Gossypium hirsutum] (73)
| | | | |
| | | | /-99-+ /----- Gh_A10G1836 [Gossypium hirsutum] (81)
/-77-+ | | | | \-100+
| | |-----------100-----------+ \-100+ \----- Cotton_A_23397_BGI-A2_v1.0 [Gossypium arboreum] (150)
| | | | |
| | | | \--------------- Gorai.011G238900.1 [Gossypium raimondii] (90)
| | | |
| | | \------------------------- Thecc1EG043157t1 [Theobroma cacao] (190)
| | |
| | \--------------------------------------------------- evm.model.supercontig_53.88 [Carica papaya] (69)
| |
| \-------------------------------------------------------- Eucgr.G02838.1.p [Eucalyptus grandis] (124)
--99-+
| /------------------------------ XP_010543398.1 [Tarenaya hassleriana] (6)
| |
| | /----- orange1.1g005075m [Citrus sinensis] (31)
| | /-100+
| | | \----- Ciclev10011194m [Citrus clementina] (112)
| | /---100---+
| | | | /----- Neem_18423_f_1 [Azadirachta indica] (41)
| | | \-100+
\--------------100-------------+ | \----- Neem_23307_f_1 [Azadirachta indica] (74)
| |
| | /----- Gh_D09G1405 [Gossypium hirsutum] (32)
| /-100+ /-95-+
| | | | \----- Gorai.006G166400.1 [Gossypium raimondii] (113)
| | | /-100+
| | | | | /----- Cotton_A_24047_BGI-A2_v1.0 [Gossypium arboreum] (56)
| | | | \-99-+
\-100+ \-100+ \----- Gh_A09G1401 [Gossypium hirsutum] (78)
| |
| \--------------- Thecc1EG022163t1 [Theobroma cacao] (50)
|
\------------------------- Eucgr.K01240.1.p [Eucalyptus grandis] (97)
Subtree rooted at node 239:
/----- (213)
/----97---+
| \----- Eucgr.J00923.1.p [Eucalyptus grandis] (130)
|
/-------------------97-------------------+ /----- orange1.1g004896m [Citrus sinensis] (79)
| | /-100+
| | | \----- Ciclev10027901m [Citrus clementina] (119)
| \-100+
| | /----- Neem_4289_f_1 [Azadirachta indica] (82)
| \-100+
| \----- Neem_32147_f_1 [Azadirachta indica] (93)
|
| /-------------------- Thhalv10016329m [Eutrema salsugineum] (16)
| |
| | /----- XP_013637173.1 [Brassica oleracea] (29)
| | /-100+
| /-91-+ | \----- GSBRNA2T00089963001 [Brassica napus] (33)
| | | /-100+
| | | | | /----- XP_009103678.1 [Brassica rapa] (52)
| | | | \-100+
| /-100+ \-100+ \----- GSBRNA2T00118741001 [Brassica napus] (129)
| | | |
| | | \--------------- Rsa1.0_02992.1_g00004.1 [Raphanus sativus] (89)
| | |
| | \------------------------- Tp4g11140 [Thellungiella parvula] (117)
| |
/-100+ | /----- Cagra.1876s0007.1.p [Capsella grandiflora] (26)
| | | /-100+
| | /--66-+ | \----- Carubv10022755m [Capsella rubella] (83)
| | | | /-98-+
| | | | | | /----- AT2G28350.1 [Arabidopsis thaliana] (57)
| | | | | \-61-+
| | | | /-100+ \----- 481671 [Arabidopsis lyrata] (60)
| | | | | |
| | | | | \--------------- Bostr.27991s0089.1.p [Boechera stricta] (99)
| | /-100+ \---100---+
| | | | | /---------- Csa05g038330.1 [Camelina sativa] (27)
| | | | | |
| | | | \---100---+ /----- Csa16g016820.1 [Camelina sativa] (35)
--93-+ | | | \-98-+
| | /-99-+ | \----- Csa07g016220.1 [Camelina sativa] (77)
| | | | |
| | | | \------------------------------------ KFK32306.1 [Arabis alpina] (20)
| | | |
| | /-100+ \----------------------------------------- AA32G00876 [Aethionema arabicum] (62)
| | | |
| | | | /----- XP_010521760.1 [Tarenaya hassleriana] (19)
| \-97-+ \-------------------100------------------+
| | \----- XP_010557327.1 [Tarenaya hassleriana] (100)
| |
| \--------------------------------------------------- evm.model.supercontig_65.4 [Carica papaya] (64)
|
\------------------------------------------------------------- Thecc1EG042067t1 [Theobroma cacao] (96)
Root part of tree:
/------------------------------------------------------------------ Gh_A05G0895 [Gossypium hirsutum] (1)
|
|------------------------------------------------------------------ Cotton_A_07064_BGI-A2_v1.0 [Gossypium arboreum] (5)
|
| /-------------------------------------------- (239)
| |
| | /----------- Gorai.013G267100.1 [Gossypium raimondii] (4)
| | /----100---+
+ | | \----------- Gh_D13G2411 [Gossypium hirsutum] (59)
| /----100---+ /----100---+
| | | | | /----------- Cotton_A_10518_BGI-A2_v1.0 [Gossypium arboreum] (42)
| | | | \----100---+
| | | | \----------- Gh_A13G2013 [Gossypium hirsutum] (120)
| | \----96----+
| | | /----------- Cotton_A_04263_BGI-A2_v1.0 [Gossypium arboreum] (15)
| | | /----100---+
\----100---+ | | \----------- Gh_A03G0274 [Gossypium hirsutum] (140)
| \----100---+
| | /----------- Gh_D03G1293 [Gossypium hirsutum] (46)
| \----100---+
| \----------- Gorai.003G142500.1 [Gossypium raimondii] (170)
|
| /----------- Gorai.009G107800.1 [Gossypium raimondii] (12)
\--------------------100--------------------+
\----------- Gh_D05G0978 [Gossypium hirsutum] (72)
|
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
Supported By
|