Subtree rooted at node 131:

                                                                    /----- Gh_A12G2495 [Gossypium hirsutum]                     (3)
                                                               /-94-+                 
                                                               |    \----- Cotton_A_26598_BGI-A2_v1.0 [Gossypium arboreum]      (57)
                                                          /-100+                      
                                                          |    |    /----- Gh_D12G2623 [Gossypium hirsutum]                     (12)
                                                          |    \-97-+                 
           /----------------------100---------------------+         \----- Gorai.008G296800.1 [Gossypium raimondii]             (44)
           |                                              |                           
           |                                              \--------------- Thecc1EG012104t1 [Theobroma cacao]                   (31)
           |                                                                          
           |                                                        /----- Ciclev10022781m [Citrus clementina]                  (4)
           |                                                   /-100+                 
           |                                                   |    \----- orange1.1g038569m [Citrus sinensis]                  (74)
           |------------------------100------------------------+                      
           |                                                   \---------- Neem_762_f_1 [Azadirachta indica]                    (77)
           |                                                                          
           |                                        /--------------------- 676730168 [Sisymbrium irio]                          (5)
           |                                        |                                 
           |                                        |               /----- XP_009115534.1 [Brassica rapa]                       (11)
           |                                        |          /-99-+                 
           |                                        |          |    \----- XP_013638685.1 [Brassica oleracea]                   (34)
           |                                        |----71----+                      
           |                                        |          \---------- RrC1204_p1 [Raphanus raphanistrum]                   (48)
           |                                        |                                 
           |                                        |               /----- RrC6642_p1 [Raphanus raphanistrum]                   (14)
           |                                        |     /---100---+                 
           |                                        |     |         \----- Rsa1.0_00596.1_g00002.1 [Raphanus sativus]           (15)
           |                                        |     |                           
           |                                        |--58-+    /---------- GSBRNA2T00073050001 [Brassica napus]                 (19)
           |                                   /-59-+     |    |                      
           |                                   |    |     |    |    /----- XP_013600741.1 [Brassica oleracea]                   (42)
           |                                   |    |     \-53-+-81-+                 
           |                                   |    |          |    \----- GSBRNA2T00153204001 [Brassica napus]                 (51)
           |                                   |    |          |                      
           |                                   |    |          \---------- XP_009110101.1 [Brassica rapa]                       (59)
           |                                   |    |                                 
           |                                   |    |--------------------- Tp1g20820 [Thellungiella parvula]                    (23)
           |                                   |    |                                 
           |                                   |    |--------------------- Thhalv10009009m [Eutrema salsugineum]                (28)
           |                                   |    |                                 
           |                                   |    |          /---------- Rsa1.0_00346.1_g00015.1 [Raphanus sativus]           (55)
           |                                   |    |          |                      
           |                                   |    \----80----+    /----- GSBRNA2T00088489001 [Brassica napus]                 (62)
           |                                   |               \-96-+                 
           |                              /-89-+                    \----- GSBRNA2T00008403001 [Brassica napus]                 (65)
           |                              |    |                                      
           |                              |    |               /---------- Bostr.12659s0199.1.p [Boechera stricta]              (22)
           |                              |    |               |                      
           |                              |    |               |---------- 472599 [Arabidopsis lyrata]                          (37)
           |                              |    |               |                      
           |                              |    |               |    /----- Carubv10011119m [Capsella rubella]                   (38)
           |                              |    |               |    |                 
           |                              |    |               |-93-+----- Csa03g027300.1 [Camelina sativa]                     (43)
           |                              |    |               |    |                 
           |                              |    |          /-64-+    \----- Csa17g030550.1 [Camelina sativa]                     (63)
           |                         /-91-+    |          |    |                      
           |                         |    |    |          |    |    /----- Csa14g030660.1 [Camelina sativa]                     (53)
           |                         |    |    |          |    |-62-+                 
           |                         |    |    |          |    |    \----- Cagra.0605s0071.1.p [Capsella grandiflora]           (60)
           |                         |    |    \----54----+    |                      
           |                         |    |               |    |---------- AT1G23380.2 [Arabidopsis thaliana]                   (72)
           |                         |    |               |    |                      
           |                         |    |               |    \---------- Araha.41631s0001.1.p [Arabidopsis halleri]           (82)
           |                         |    |               |                           
           |                         |    |               \--------------- KFK44428.1 [Arabis alpina]                           (50)
      --53-+                         |    |                                           
           |                         |    \------------------------------- AA39G00533 [Aethionema arabicum]                     (18)
           |                         |                                                
           |                         |                         /---------- Bostr.10273s0307.1.p [Boechera stricta]              (6)
           |                         |                         |                      
           |                         |                    /-78-+    /----- Cagra.1777s0019.1.p [Capsella grandiflora]           (32)
           |                         |                    |    \-100+                 
           |                         |                    |         \----- Carubv10022064m [Capsella rubella]                   (84)
           |                         |                    |                           
           |                         |                    |--------------- 676726552 [Sisymbrium irio]                          (16)
           |                    /-92-+                    |                           
           |                    |    |                    |         /----- GSBRNA2T00116569001 [Brassica napus]                 (21)
           |                    |    |                    |    /-100+                 
           |                    |    |                    |    |    \----- XP_009127805.1 [Brassica rapa]                       (71)
           |                    |    |                    |-100+                      
           |                    |    |                    |    |    /----- XP_013619273.1 [Brassica oleracea]                   (24)
           |                    |    |                    |    \-100+                 
           |                    |    |                    |         \----- GSBRNA2T00030952001 [Brassica napus]                 (45)
           |                    |    |                    |                           
           |                    |    |                    |         /----- Csa09g071770.1 [Camelina sativa]                     (35)
           |                    |    |                    |---100---+                 
           |                    |    |              /--99-+         \----- Csa16g032090.1 [Camelina sativa]                     (47)
           |                    |    |              |     |                           
           |                    |    |              |     |--------------- Rsa1.0_00894.1_g00018.1 [Raphanus sativus]           (36)
           |                    |    |              |     |                           
           |                    |    |              |     |         /----- AT1G70510.1 [Arabidopsis thaliana]                   (40)
           |               /-92-+    |              |     |---100---+                 
           |               |    |    |              |     |         \----- 476175 [Arabidopsis lyrata]                          (67)
           |               |    |    |              |     |                           
           |               |    |    |              |     |--------------- Araha.8604s0004.1.p [Arabidopsis halleri]            (41)
           |               |    |    \------99------+     |                           
           |               |    |                   |     |--------------- Thhalv10019501m [Eutrema salsugineum]                (61)
           |               |    |                   |     |                           
           |               |    |                   |     |--------------- Tp5g25630 [Thellungiella parvula]                    (68)
           |               |    |                   |     |                           
           |               |    |                   |     |--------------- RrC915_p1 [Raphanus raphanistrum]                    (69)
           |         /--92-+    |                   |     |                           
           |         |     |    |                   |     \--------------- KFK41461.1 [Arabis alpina]                           (76)
           |         |     |    |                   |                                 
           |         |     |    |                   \--------------------- AA38G00045 [Aethionema arabicum]                     (46)
           |         |     |    |                                                     
           |         |     |    |                                   /----- XP_010552663.1 [Tarenaya hassleriana]                (58)
           |         |     |    \----------------100----------------+                 
           |         |     |                                        \----- XP_010551592.1 [Tarenaya hassleriana]                (78)
           |         |     |                                                          
           |         |     \---------------------------------------------- evm.model.supercontig_69.81 [Carica papaya]          (79)
           |         |                                                                
           |    /-90-+                                              /----- Gorai.005G180500.1 [Gossypium raimondii]             (7)
           |    |    |                                              |                 
           |    |    |                                         /-63-+----- Gh_A03G1199 [Gossypium hirsutum]                     (25)
           |    |    |                                         |    |                 
           |    |    |                                    /-100+    \----- Cotton_A_23798_BGI-A2_v1.0 [Gossypium arboreum]      (75)
           |    |    |                                    |    |                      
           |    |    |                                    |    \---------- Gh_D02G1633 [Gossypium hirsutum]                     (39)
           |    |    |                              /--56-+                           
           |    |    |                              |     |    /---------- Gorai.009G336900.1 [Gossypium raimondii]             (27)
           |    |    |                              |     |    |                      
           |    |    |                              |     \-100+    /----- Cotton_A_33669_BGI-A2_v1.0 [Gossypium arboreum]      (29)
           \-100+    \--------------98--------------+          \-100+                 
                |                                   |               \----- Gh_A05G2722 [Gossypium hirsutum]                     (85)
                |                                   |                                 
                |                                   \--------------------- Thecc1EG010433t1 [Theobroma cacao]                   (52)
                |                                                                     
                |                                                   /----- Neem_831_f_4 [Azadirachta indica]                    (9)
                |                                              /-100+                 
                |                                              |    \----- Neem_35757_f_1 [Azadirachta indica]                  (81)
                |                                         /-80-+                      
                |                                         |    |    /----- orange1.1g045160m [Citrus sinensis]                  (56)
                |                                         |    \-100+                 
                \--------------------92-------------------+         \----- Ciclev10033524m [Citrus clementina]                  (73)
                                                          |                           
                                                          \--------------- Eucgr.H02544.1.p [Eucalyptus grandis]                (30)
                                                                                      
      Root part of tree:

      /------------------------------------------------------------------- evm.model.supercontig_48.162 [Carica papaya]         (1)
      |                                                                               
      |                                                       /----------- evm.model.supercontig_254.5 [Carica papaya]          (2)
      |                                            /----100---+                       
      |                                            |          \----------- (131)
      |---------------------53---------------------+                                  
      |                                            \---------------------- Eucgr.H03292.1.p [Eucalyptus grandis]                (26)
      |                                                                               
      |                                                       /----------- Gh_D11G2813 [Gossypium hirsutum]                     (8)
      |                                            /----86----+                       
      |                                            |          \----------- Gorai.007G306500.1 [Gossypium raimondii]             (49)
      |                                 /----100---+                                  
      |                                 |          |          /----------- Cotton_A_10669_BGI-A2_v1.0 [Gossypium arboreum]      (66)
      |                                 |          \----100---+                       
      +                                 |                     \----------- Gh_A11G2492 [Gossypium hirsutum]                     (80)
      |                                 |                                             
      |                                 |                     /----------- Gorai.004G236400.1 [Gossypium raimondii]             (17)
      |                     /-----88----+          /----99----+                       
      |                     |           |          |          \----------- Gh_D08G2181 [Gossypium hirsutum]                     (33)
      |                     |           |----100---+                                  
      |                     |           |          \---------------------- Cotton_A_18479_BGI-A2_v1.0 [Gossypium arboreum]      (64)
      |                     |           |                                             
      |                     |           \--------------------------------- Thecc1EG026767t1 [Theobroma cacao]                   (83)
      |          /----100---+                                                         
      |          |          |                                 /----------- Gh_A13G0926 [Gossypium hirsutum]                     (13)
      |          |          |                      /----57----+                       
      |          |          |                      |          \----------- Gorai.013G129400.1 [Gossypium raimondii]             (54)
      |          |          |                      |                                  
      \----53----+          \----------100---------+---------------------- Gh_D13G1173 [Gossypium hirsutum]                     (20)
                 |                                 |                                  
                 |                                 \---------------------- Cotton_A_34107_BGI-A2_v1.0 [Gossypium arboreum]      (70)
                 |                                                                    
                 \-------------------------------------------------------- Ciclev10001779m [Citrus clementina]                  (10)