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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Phylogenetic Tree for OGEM848
| Phylogenetic tree for protein ? help Back to Top |
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Subtree rooted at node 209:
/----- Csa04g009900.1 [Camelina sativa] (5)
/-53-+
| \----- Csa09g008780.1 [Camelina sativa] (130)
/-100+
| \---------- Csa06g005290.1 [Camelina sativa] (13)
/-72-+
| \--------------- Bostr.0556s0243.1.p [Boechera stricta] (25)
|
/---------100--------+ /----- 484335 [Arabidopsis lyrata] (57)
| | |
| \------100-----+----- AT3G25730.1 [Arabidopsis thaliana] (95)
| |
| \----- Araha.43210s0001.1.p [Arabidopsis halleri] (110)
|
| /--------------- RrC3679_p3 [Raphanus raphanistrum] (18)
| |
| | /----- XP_013599419.1 [Brassica oleracea] (73)
| /-100+ /-100+
| | | | \----- GSBRNA2T00139176001 [Brassica napus] (78)
| | \-100+
| | \---------- XP_009152116.1 [Brassica rapa] (82)
/-91-+ |
| | /-86-+ /----- XP_013619184.1 [Brassica oleracea] (30)
| | | | /-100+
| | | | | \----- GSBRNA2T00108406001 [Brassica napus] (59)
| | | | /-100+
| | | | | \---------- GSBRNA2T00072242001 [Brassica napus] (75)
| | /-100+ \-100+
| | | | | /----- RrC16243_p1 [Raphanus raphanistrum] (51)
| | | | \---100---+
/-100+ | | | \----- Rsa1.0_08129.1_g00003.1 [Raphanus sativus] (60)
| | | /--99-+ |
| | | | | \------------------------- 676757746 [Sisymbrium irio] (71)
| | | | |
| | \-100+ \------------------------------ Tp2g14980 [Thellungiella parvula] (180)
/-97-+ | |
| | | \------------------------------------ Thhalv10004508m [Eutrema salsugineum] (48)
| | |
| | \---------------------------------------------- KFK35073.1 [Arabis alpina] (100)
/-76-+ |
| | \--------------------------------------------------- AA53G00814 [Aethionema arabicum] (45)
| |
| \-------------------------------------------------------- AA65G00360 [Aethionema arabicum] (43)
|
| /--------------- Bostr.13671s0120.1.p [Boechera stricta] (6)
| |
| | /----- Csa17g018590.1 [Camelina sativa] (44)
| /-53-+ /-91-+
| | | | \----- Csa14g016230.1 [Camelina sativa] (69)
| | \-100+
| /-100+ \---------- Csa03g017070.1 [Camelina sativa] (63)
| | |
| | | /----- Cagra.3501s0173.1.p [Capsella grandiflora] (15)
| | \------100-----+
| /-100+ \----- Carubv10009612m [Capsella rubella] (91)
| | |
| | | /---------- 888685 [Arabidopsis lyrata] (29)
--100+ | | |
| /----91----+ \------100-----+ /----- Araha.12794s0001.1.p [Arabidopsis halleri] (50)
| | | \-90-+
| | | \----- AT1G13260.1 [Arabidopsis thaliana] (112)
| | |
| | \------------------------------ KFK43591.1 [Arabis alpina] (36)
| |
| | /----- XP_013637759.1 [Brassica oleracea] (8)
| | /-100+
| | | \----- GSBRNA2T00033750001 [Brassica napus] (68)
| | |
| | /-100+---------- GSBRNA2T00105354001 [Brassica napus] (10)
| | | |
| | | \---------- XP_009148531.1 [Brassica rapa] (170)
| | /-100+
| | | | /----- RrC10185_p1 [Raphanus raphanistrum] (65)
| | | \----75---+
\--------100--------+ | \----- Rsa1.0_00325.1_g00002.1 [Raphanus sativus] (83)
| |
| | /----- XP_009118012.1 [Brassica rapa] (14)
| /-88-+ /-99-+
| | | | \----- GSBRNA2T00027433001 [Brassica napus] (56)
| | | /-100+
| | | | | /----- XP_013599509.1 [Brassica oleracea] (116)
| | | | \-99-+
| | \-100+ \----- GSBRNA2T00023485001 [Brassica napus] (118)
| /-100+ |
| | | | /----- Rsa1.0_05254.1_g00001.1 [Raphanus sativus] (55)
| | | \---100---+
| | | \----- RrC2558_p1 [Raphanus raphanistrum] (76)
| /--93-+ |
| | | \------------------------- 676755474 [Sisymbrium irio] (90)
| | |
\-63-+ \------------------------------ Thhalv10010019m [Eutrema salsugineum] (33)
|
\------------------------------------ Tp1g11770 [Thellungiella parvula] (114)
Subtree rooted at node 215:
/----- Rsa1.0_02994.1_g00004.1 [Raphanus sativus] (2)
/---100---+
| \----- RrC7086_p1 [Raphanus raphanistrum] (88)
|
/-100+ /----- XP_013619115.1 [Brassica oleracea] (53)
| | /-100+
| | | \----- GSBRNA2T00135275001 [Brassica napus] (120)
| \-100+
/-96-+ | /----- XP_009127674.1 [Brassica rapa] (64)
| | \-100+
| | \----- GSBRNA2T00082795001 [Brassica napus] (115)
/-78-+ |
| | \-------------------- 676738834 [Sisymbrium irio] (190)
| |
/--97-+ \------------------------- Thhalv10019566m [Eutrema salsugineum] (92)
| |
/-50-+ \------------------------------ Tp5g23950 [Thellungiella parvula] (11)
| |
| \------------------------------------ KFK41311.1 [Arabis alpina] (26)
|
| /----- Csa16g028940.1 [Camelina sativa] (9)
| /-100+
| | \----- Csa07g034530.1 [Camelina sativa] (62)
| /-72-+
/-97-+ | | /----- Csa05g085430.1 [Camelina sativa] (35)
| | | \-78-+
| | /-100+ \----- Csa05g085440.1 [Camelina sativa] (46)
| | | |
| | | | /----- Cagra.1157s0007.1.p [Capsella grandiflora] (49)
| | | \---100---+
| | | \----- Carubv10020536m [Capsella rubella] (70)
| \---------100--------+
| | /----- AT1G68840.1 [Arabidopsis thaliana] (28)
/-56-+ | /-100+
| | | | \----- 476011 [Arabidopsis lyrata] (54)
| | \----52---+
| | \---------- Bostr.10273s0485.1.p [Boechera stricta] (96)
| |
| | /----- XP_010551303.1 [Tarenaya hassleriana] (21)
| |-------------------100------------------+
| | \----- XP_010536332.1 [Tarenaya hassleriana] (38)
| |
| \---------------------------------------------- AA39G00678 [Aethionema arabicum] (98)
|
| /----- 890147 [Arabidopsis lyrata] (3)
| /-100+
| | \----- Araha.19984s0007.1.p [Arabidopsis halleri] (67)
| /-100+
| | \---------- AT1G25560.1 [Arabidopsis thaliana] (121)
| /-97-+
| | \--------------- Bostr.12659s0398.1.p [Boechera stricta] (24)
| |
/-97-+ | /---------- Csa17g034910.1 [Camelina sativa] (22)
| | /------------99-----------+ |
| | | | /-100+ /----- Csa03g029510.1 [Camelina sativa] (32)
| | | | | \-99-+
| | | | | \----- Csa14g032810.1 [Camelina sativa] (160)
| | | \-92-+
| | | | /----- Cagra.11546s0001.1.p [Capsella grandiflora] (39)
| | | \---100---+
| | | \----- Carubv10010429m [Capsella rubella] (72)
| | |
| | | /------------------------- Thhalv10007983m [Eutrema salsugineum] (4)
| | | |
| | | | /-------------------- KFK44549.1 [Arabis alpina] (40)
| | | /-59-+ |
| | | | | | /----- GSBRNA2T00059936001 [Brassica napus] (58)
| | | | | | /-100+
| | | | \-63-+ | \----- XP_009109894.1 [Brassica rapa] (93)
| | | | | /-100+
| \-100+ | | | | /----- XP_013622296.1 [Brassica oleracea] (117)
| | | | | \-100+
| | /--60-+ \-99-+ \----- GSBRNA2T00026623001 [Brassica napus] (120)
| | | | |
/-95-+ | | | | /----- Rsa1.0_18041.1_g00001.1 [Raphanus sativus] (74)
| | | | | \---100---+
| | | | | \----- RrC1796_p5 [Raphanus raphanistrum] (89)
| | | | |
| | | | \------------------------------ Tp1g22650 [Thellungiella parvula] (80)
| | | /-60-+
| | | | | /----- GSBRNA2T00142419001 [Brassica napus] (27)
| | | | | /-100+
| | | | | | \----- XP_013637910.1 [Brassica oleracea] (87)
| | | | | /-99-+
| | | | | | | /----- XP_009115339.1 [Brassica rapa] (79)
| | | | | | \-100+
| | \-60-+ \---------100--------+ \----- GSBRNA2T00090567001 [Brassica napus] (113)
| | | |
--68-+ | | | /----- RrC15946_p2 [Raphanus raphanistrum] (41)
| | | \---100---+
| | | \----- Rsa1.0_04734.1_g00001.1 [Raphanus sativus] (140)
| | |
| | \----------------------------------------- 676717432 [Sisymbrium irio] (110)
| |
| | /---------- (209)
| | |
| \---------------------100---------------------+ /----- XP_010528045.1 [Tarenaya hassleriana] (7)
| \-99-+
| \----- XP_010556384.1 [Tarenaya hassleriana] (23)
|
| /---------- Thecc1EG019508t1 [Theobroma cacao] (17)
| |
\------------------------100-----------------------+ /----- orange1.1g021945m [Citrus sinensis] (52)
\-100+
\----- Ciclev10012300m [Citrus clementina] (119)
Root part of tree:
/------------------------------------------------------------------ Eucgr.D00053.1.p [Eucalyptus grandis] (1)
|
|------------------------------------------------------------------ EcC042185.20 [Eucalyptus camaldulensis] (66)
|
| /--------------------------------- (215)
| |
| | /----- Gh_D02G1153 [Gossypium hirsutum] (19)
| | /-100-+
| | | \----- Gorai.005G138100.1 [Gossypium raimondii] (111)
| | /-100+
| | | \----------- Gh_A03G0840 [Gossypium hirsutum] (94)
| | |
| | | /----- Gorai.008G185900.1 [Gossypium raimondii] (37)
| | /-100-+ |
| | | | /-100-+----- Gh_A12G1554 [Gossypium hirsutum] (85)
| /-68-+ | | | |
| | | | \-80-+ \----- Cotton_A_35449_BGI-A2_v1.0 [Gossypium arboreum] (86)
| | | | |
| | | /-100+ \----------- Thecc1EG011862t1 [Theobroma cacao] (47)
| | | | |
| | | | | /----- Cotton_A_37921_BGI-A2_v1.0 [Gossypium arboreum] (20)
+ | | | | /-100-+
| | | | | | \----- Gh_A13G2131 [Gossypium hirsutum] (97)
| | | | \----100---+
| | | | | /----- Gh_D13G0717 [Gossypium hirsutum] (77)
| /-100-+ \-100-+ \-100-+
| | | | \----- Gorai.013G080000.1 [Gossypium raimondii] (150)
| | | |
| | | | /----- Ciclev10031846m [Citrus clementina] (34)
| | | | /-100-+
| | | | | \----- orange1.1g017035m [Citrus sinensis] (81)
| /-100+ | \-------91------+
| | | | \----------- Neem_8605_f_1 [Azadirachta indica] (84)
| | | |
| | | \-------------------------------------- Eucgr.G02345.1.p [Eucalyptus grandis] (31)
| /-100-+ |
| | | \-------------------------------------------- Eucgr.B03048.1.p [Eucalyptus grandis] (61)
| | |
| | | /----- Eucgr.B03050.1.p [Eucalyptus grandis] (42)
| /-100+ \--------------------100--------------------+
| | | \----- EcS754042.10 [Eucalyptus camaldulensis] (99)
| | |
\-100-+ \------------------------------------------------------- Eucgr.L01673.1.p [Eucalyptus grandis] (12)
|
\------------------------------------------------------------ EcS508047.10 [Eucalyptus camaldulensis] (16)
|
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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