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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Phylogenetic Tree for OGEM856
| Phylogenetic tree for protein ? help Back to Top |
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Subtree rooted at node 172:
/------------------------------------ Thhalv10004351m [Eutrema salsugineum] (2)
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| /----- GSBRNA2T00109493001 [Brassica napus] (3)
| /-100+
| | \----- XP_013606816.1 [Brassica oleracea] (111)
| /-100+
| | | /----- GSBRNA2T00020421001 [Brassica napus] (160)
| | \-100+
| /---100---+ \----- XP_009111911.1 [Brassica rapa] (117)
| | |
| | | /----- Rsa1.0_00045.1_g00032.1 [Raphanus sativus] (29)
/-100+ | \---100---+
| | | \----- RrC728_p5 [Raphanus raphanistrum] (33)
| | |
| | | /----- RrC1622_p3 [Raphanus raphanistrum] (25)
| | /-100+ /---100---+
| | | | | \----- Rsa1.0_00028.1_g00052.1 [Raphanus sativus] (70)
| | | | |
| | | | /-100+ /----- GSBRNA2T00120571001 [Brassica napus] (26)
| | | | | | /-100+
| | | | | | | \----- XP_013616187.1 [Brassica oleracea] (59)
| | | | | \-100+
| \-100-+ \-97-+ | /----- GSBRNA2T00055391001 [Brassica napus] (77)
| | | \-100+
| | | \----- XP_009129807.1 [Brassica rapa] (87)
| | |
| | \-------------------- 676781968 [Sisymbrium irio] (100)
/-100+ |
| | \------------------------------ Tp2g19980 [Thellungiella parvula] (55)
| |
| | /----- 489672 [Arabidopsis lyrata] (4)
| | /-100+
| | | \----- Araha.4581s0001.1.p [Arabidopsis halleri] (32)
| | /---100---+
| | | \---------- AT5G29000.2 [Arabidopsis thaliana] (84)
| | |
| | | /----- Carubv10002022m [Capsella rubella] (7)
| | | /-100+
| | /-99-+ | \----- Carubv10012777m [Capsella rubella] (73)
| | | | /-100+
| | | | | \---------- Carubv10001064m [Capsella rubella] (27)
| | | | |
| | | \-90-+ /----- Csa08g032200.1 [Camelina sativa] (20)
| \-------98------+ | /-68-+
| | | | \----- Csa20g058800.1 [Camelina sativa] (110)
| | \-100+
| | \---------- Csa13g039160.1 [Camelina sativa] (91)
| |
| \------------------------- Bostr.23151s0001.1.p [Boechera stricta] (6)
|
| /----- Araha.18617s0002.1.p [Arabidopsis halleri] (9)
| /-100+
| | \----- 317308 [Arabidopsis lyrata] (120)
/-100+ /---100---+
| | | \---------- AT3G04450.1 [Arabidopsis thaliana] (54)
| | |
| | | /---------- Csa19g006580.1 [Camelina sativa] (14)
| | /-100+ |
| | | | /-100+ /----- Csa15g005310.1 [Camelina sativa] (65)
| | | | | \-100+
| | | | | \----- Csa01g005130.1 [Camelina sativa] (140)
| | | \-100+
| | /-100+ | /----- Carubv10013867m [Capsella rubella] (19)
| | | | \---100---+
| | | | \----- Cagra.4031s0031.1.p [Capsella grandiflora] (71)
| | | |
| | | \------------------------- Bostr.2570s0262.1.p [Boechera stricta] (49)
| | |
| | | /----- GSBRNA2T00092876001 [Brassica napus] (11)
| | | /-100+
/-100+ | | | \----- XP_009123991.1 [Brassica rapa] (53)
| | | /-100-+ /-100+
| | | | | | | /----- GSBRNA2T00075662001 [Brassica napus] (24)
| | | | | | \-100+
| | | | | /-100+ \----- XP_013587723.1 [Brassica oleracea] (90)
| | | | | | |
| | | | | | | /----- RrC7017_p1 [Raphanus raphanistrum] (30)
| | | | | /-100+ \---100---+
| | \---100---+ | | | \----- Rsa1.0_00087.1_g00089.1 [Raphanus sativus] (115)
/-92-+ | | | | |
| | | | \-100+ \-------------------- Tp3g03300 [Thellungiella parvula] (21)
| | | | |
| | | | \------------------------- Thhalv10020941m [Eutrema salsugineum] (96)
| | | |
| | | \------------------------------------ AA10G00173 [Aethionema arabicum] (78)
| | |
| | \--------------------------------------------------- XP_010549657.1 [Tarenaya hassleriana] (150)
| |
| \-------------------------------------------------------- XP_010550325.1 [Tarenaya hassleriana] (56)
|
| /--------------- Thecc1EG026171t1 [Theobroma cacao] (5)
--100+ |
| | /----- Cotton_A_09284_BGI-A2_v1.0 [Gossypium arboreum] (16)
| /-100+ /-100+
| | | | \----- Gh_A11G2224 [Gossypium hirsutum] (44)
| | \-100+
| | | /----- Gh_D11G2533 [Gossypium hirsutum] (37)
| | \-66-+
| /-51-+ \----- Gorai.007G274700.1 [Gossypium raimondii] (52)
| | |
| | | /---------- Eucgr.B02155.1.p [Eucalyptus grandis] (45)
| | | |
| | \---100---+ /----- EcC001127.10 [Eucalyptus camaldulensis] (69)
\-----------------87----------------+ \-100+
| \----- EcC035068.20 [Eucalyptus camaldulensis] (82)
|
| /--------------- evm.model.supercontig_2085.1 [Carica papaya] (22)
| |
\----97---+ /---------- Neem_969_f_2 [Azadirachta indica] (35)
| |
\-100+ /----- orange1.1g014270m [Citrus sinensis] (63)
\-100+
\----- Ciclev10004984m [Citrus clementina] (88)
Subtree rooted at node 226:
/------------------------------------ (172)
|
| /----- Gorai.007G149100.1 [Gossypium raimondii] (10)
| /-100+
| | \----- Gh_D11G1369 [Gossypium hirsutum] (170)
| /-100+
| | | /----- Gh_A11G1222 [Gossypium hirsutum] (15)
| | \-100+
| /-100+ \----- Cotton_A_02995_BGI-A2_v1.0 [Gossypium arboreum] (60)
| | |
/-100+ | \--------------- Thecc1EG003939t1 [Theobroma cacao] (114)
| | |
| | /-66-+ /----- orange1.1g011771m [Citrus sinensis] (48)
| | | | /-100+
| | | | | \----- Ciclev10019954m [Citrus clementina] (83)
| | | \---100---+
| | /-84-+ | /----- Neem_29344_f_1 [Azadirachta indica] (57)
| | | | \-100+
/-100+ | | | \----- Neem_2121_f_2 [Azadirachta indica] (92)
| | \--97-+ |
| | | \------------------------- evm.model.supercontig_87.3 [Carica papaya] (46)
| | |
| | \------------------------------ Eucgr.A01323.1.p [Eucalyptus grandis] (66)
| |
| | /----- XP_010540912.1 [Tarenaya hassleriana] (40)
| \----------------100----------------+
| \----- XP_010526487.1 [Tarenaya hassleriana] (75)
|
| /----- XP_009129517.1 [Brassica rapa] (8)
| /-99-+
| | \----- GSBRNA2T00058107001 [Brassica napus] (99)
| /-100+
| | | /----- XP_013596780.1 [Brassica oleracea] (74)
| | \-100+
| /-100+ \----- GSBRNA2T00065792001 [Brassica napus] (93)
| | |
| | \--------------- Rsa1.0_03304.1_g00004.1 [Raphanus sativus] (43)
| |
| /-99-+ /----- GSBRNA2T00154727001 [Brassica napus] (17)
| | | /-100+
| | | | \----- XP_013593488.1 [Brassica oleracea] (72)
| | \---100---+
| | \---------- GSBRNA2T00004046001 [Brassica napus] (85)
| |
| |------------------------- 676753222 [Sisymbrium irio] (36)
/-100+ /-58-+
| | | | /----- XP_013605899.1 [Brassica oleracea] (47)
| | | | /-100+
| | | | | \----- GSBRNA2T00104618001 [Brassica napus] (79)
| | | | /-100+
| | | | | | /----- XP_009109073.1 [Brassica rapa] (110)
| | | | | \-100+
| | | \---100---+ \----- GSBRNA2T00078803001 [Brassica napus] (113)
| | | |
| | | | /----- Rsa1.0_00392.1_g00011.1 [Raphanus sativus] (58)
| | | \---100---+
| | | \----- RrC11203_p1 [Raphanus raphanistrum] (190)
| | |
| | | /---------- Cagra.1225s0029.1.p [Capsella grandiflora] (13)
| | /--77-+ |
| | | | /-100+ /----- Csa10g014000.1 [Camelina sativa] (28)
| | | | | \-100+
/-100+ | | | /-100+ \----- Csa12g020860.1 [Camelina sativa] (38)
| | | | | | |
| | | | | | \--------------- Bostr.7867s0704.1.p [Boechera stricta] (67)
| | | | | |
| | | | |---100---+ /----- 491902 [Arabidopsis lyrata] (18)
| | | /-100+ | | /-100+
| | | | | | | | \----- Araha.3365s0017.1.p [Arabidopsis halleri] (116)
| | | | | | \---100---+
| | | | | | \---------- AT4G28610.1 [Arabidopsis thaliana] (64)
| | | | | |
| | \-100+ | \------------------------------ Tp7g26590 [Thellungiella parvula] (62)
| | | |
| | | \------------------------------------ Thhalv10025327m [Eutrema salsugineum] (81)
| | |
| | \----------------------------------------- AA102G00020 [Aethionema arabicum] (97)
| |
| \--------------------------------------------------- AA33G00313 [Aethionema arabicum] (80)
|
/-100+ /----- GSBRNA2T00115879001 [Brassica napus] (23)
| | /-100+
| | | \----- XP_013608868.1 [Brassica oleracea] (50)
| | /-100+
| | | | /----- XP_009112659.1 [Brassica rapa] (61)
| | | \-100+
| | /---100---+ \----- GSBRNA2T00068576001 [Brassica napus] (180)
| | | |
| | | | /----- Rsa1.0_01145.1_g00007.1 [Raphanus sativus] (39)
| | | \---100---+
| | | \----- RrC5639_p3 [Raphanus raphanistrum] (68)
| | |
| | /-100+ /----- RrC19566_p1 [Raphanus raphanistrum] (41)
| | | | /------100-----+
--100+ | | | | \----- Rsa1.0_00321.1_g00005.1 [Raphanus sativus] (95)
| | | | |
| | | | | /----- GSBRNA2T00120811001 [Brassica napus] (51)
| | | \-100+ /-100+
| \-----------100-----------+ | | \----- XP_013595966.1 [Brassica oleracea] (86)
| | | /-72-+
| | | | \---------- XP_009102033.1 [Brassica rapa] (98)
| | \-100+
| | \--------------- GSBRNA2T00050761001 [Brassica napus] (76)
| |
| \------------------------------ Thhalv10002005m [Eutrema salsugineum] (31)
|
| /--------------- Bostr.7903s0128.1.p [Boechera stricta] (42)
| |
\----------------------92---------------------+ /---------- AT2G20400.1 [Arabidopsis thaliana] (89)
| |
\-100+ /----- Araha.3107s0001.1.p [Arabidopsis halleri] (130)
\-99-+
\----- 900392 [Arabidopsis lyrata] (112)
Root part of tree:
/------------------------------------------------------------------ Csa19g048360.1 [Camelina sativa] (1)
|
|------------------------------------------------------------------ Csa15g082700.1 [Camelina sativa] (94)
+
| /-------------------------------------------- (226)
| |
\---------100---------+ /---------------------- Cagra.8766s0002.1.p [Capsella grandiflora] (12)
\---------100---------+
\---------------------- Carubv10013614m [Capsella rubella] (34)
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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