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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Phylogenetic Tree for OGEM868
| Phylogenetic tree for protein ? help Back to Top |
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Subtree rooted at node 184:
/----- Rsa1.0_02584.1_g00008.1 [Raphanus sativus] (13)
/---100---+
| \----- RrC12373_p1 [Raphanus raphanistrum] (24)
|
| /---------- XP_013610600.1 [Brassica oleracea] (63)
/---100---+ |
| | | /----- GSBRNA2T00009986001 [Brassica napus] (77)
| | |-100+
| \-100+ \----- XP_009115660.1 [Brassica rapa] (89)
| |
| | /----- XP_013596023.1 [Brassica oleracea] (78)
| \-100+
| \----- GSBRNA2T00051803001 [Brassica napus] (115)
|
| /----- GSBRNA2T00104877001 [Brassica napus] (34)
/-98-+ /-100+
| | | \----- XP_009146272.1 [Brassica rapa] (54)
| | |
| | /-100+---------- XP_013638829.1 [Brassica oleracea] (86)
| | | |
| | | \---------- GSBRNA2T00106189001 [Brassica napus] (92)
| | /-100+
/-100-+ | | | /----- Rsa1.0_01148.1_g00009.1 [Raphanus sativus] (36)
| | | | \---100---+
| | \-100+ \----- RrC405_p5 [Raphanus raphanistrum] (66)
| | |
/-85-+ | \-------------------- 676784650 [Sisymbrium irio] (69)
| | |
| | \------------------------------ Tp3g13470 [Thellungiella parvula] (112)
/-82-+ |
| | \------------------------------------ Thhalv10021617m [Eutrema salsugineum] (180)
| |
| \----------------------------------------- AT3G15270.1 [Arabidopsis thaliana] (71)
|
/-89-+ /-------------------- Bostr.28625s0189.1.p [Boechera stricta] (21)
| | |
| | | /----- Csa15g019750.1 [Camelina sativa] (33)
| | | /-100+
| \-----------100-----------+ | \----- Csa19g021980.1 [Camelina sativa] (53)
| | /-100+
/-100+ | | \---------- Csa01g017810.1 [Camelina sativa] (62)
| | \-100+
| | | /----- Cagra.0007s0069.1.p [Capsella grandiflora] (56)
| | \---100---+
/-100+ | \----- Carubv10014636m [Capsella rubella] (84)
| | |
| | \--------------------------------------------------- Araha.0665s0005.1.p [Arabidopsis halleri] (99)
--100+ |
| \-------------------------------------------------------- KFK38868.1 [Arabis alpina] (98)
|
\------------------------------------------------------------- AA26G00234 [Aethionema arabicum] (22)
Subtree rooted at node 188:
/----- Cagra.1472s0017.1.p [Capsella grandiflora] (5)
/-100+
| \----- Carubv10010422m [Capsella rubella] (15)
|
/----99---+ /----- Csa03g060290.1 [Camelina sativa] (19)
| | |
| \-100+----- Csa17g093410.1 [Camelina sativa] (20)
| |
| \----- Csa14g063510.1 [Camelina sativa] (51)
|
/------100------+ /----- 474435 [Arabidopsis lyrata] (30)
| | /-63-+
| | | \----- Araha.14034s0015.1.p [Arabidopsis halleri] (67)
| | /-100+
| | | \---------- AT1G53160.1 [Arabidopsis thaliana] (45)
| \-95-+
| \--------------- Bostr.0124s0106.1.p [Boechera stricta] (40)
|
| /---------- XP_013590498.1 [Brassica oleracea] (17)
| |
| | /----- Rsa1.0_06065.1_g00002.1 [Raphanus sativus] (23)
| |-100+
| | \----- RrC16500_p1 [Raphanus raphanistrum] (96)
| /----57---+
| | | /----- XP_009147622.1 [Brassica rapa] (29)
| | |-57-+
| | | \----- GSBRNA2T00024664001 [Brassica napus] (60)
| | |
| | \---------- GSBRNA2T00030719001 [Brassica napus] (75)
/-99-+ |
| | | /----- XP_013590493.1 [Brassica oleracea] (18)
| | | /-100+
| | | | \----- GSBRNA2T00096923001 [Brassica napus] (68)
| | /-55-+ /-100+
| | | | | | /----- GSBRNA2T00033324001 [Brassica napus] (46)
| | | | | \-100+
| | | |-100+ \----- XP_009144795.1 [Brassica rapa] (85)
| | | | |
| | | | | /----- Rsa1.0_04403.1_g00002.1 [Raphanus sativus] (26)
| | /-57-+ | \----93---+
/-100+ | | | | \----- RrC856_p6 [Raphanus raphanistrum] (61)
| | | | | |
| | | | | \-------------------- 676740106 [Sisymbrium irio] (47)
| | |--64-+ |
| | | | \------------------------- Tp1g39700 [Thellungiella parvula] (93)
| | | |
/-100+ | | \------------------------------ KFK35743.1 [Arabis alpina] (91)
| | | |
| | | \------------------------------------ Thhalv10011728m [Eutrema salsugineum] (113)
| | |
/-63-+ | \----------------------------------------- AA15G00093 [Aethionema arabicum] (12)
| | |
| | \---------------------------------------------- (184)
/-92-+ |
| | \--------------------------------------------------- XP_010545847.1 [Tarenaya hassleriana] (170)
| |
--64-+ \-------------------------------------------------------- XP_010542291.1 [Tarenaya hassleriana] (35)
|
\------------------------------------------------------------- Gh_Sca129122G01 [Gossypium hirsutum] (37)
Subtree rooted at node 200:
/----- Neem_32412_f_3 [Azadirachta indica] (3)
/-100+
| \----- Neem_2225_f_2 [Azadirachta indica] (160)
/--------100--------+
| | /----- Ciclev10009879m [Citrus clementina] (80)
| \-100+
| \----- orange1.1g032937m [Citrus sinensis] (81)
|
| /----- Gh_D13G1551 [Gossypium hirsutum] (25)
| |
| /-68-+----- Cotton_A_16783_BGI-A2_v1.0 [Gossypium arboreum] (72)
| | |
| | \----- Gh_A13G1251 [Gossypium hirsutum] (88)
| /-100+
/--58-+ | |---------- Gh_Sca067845G01 [Gossypium hirsutum] (31)
| | | |
| | /-100+ \---------- Gorai.013G169800.1 [Gossypium raimondii] (58)
| | | |
| | | \--------------- Thecc1EG031595t2 [Theobroma cacao] (117)
| | |
| | /-100+ /----- Gorai.002G068300.1 [Gossypium raimondii] (48)
| | | | /-91-+
| | | | | \----- Gh_D01G0457 [Gossypium hirsutum] (110)
| | | \---100---+
| \-85-+ | /----- Cotton_A_06263_BGI-A2_v1.0 [Gossypium arboreum] (59)
| | \-65-+
| | \----- Gh_A01G0447 [Gossypium hirsutum] (110)
/-68-+ |
| | \------------------------- evm.model.supercontig_80.88 [Carica papaya] (32)
| |
| | /---------- Neem_1081_f_1 [Azadirachta indica] (49)
| | |
| | /-100+ /----- Ciclev10016841m [Citrus clementina] (52)
| | | \-100+
| | /-100+ \----- orange1.1g029650m [Citrus sinensis] (82)
| | | |
/-58-+ | | \--------------- Thecc1EG008150t1 [Theobroma cacao] (83)
| | | /-98-+
| | | | | /----- Eucgr.K01046.1.p [Eucalyptus grandis] (73)
| | | | \------100-----+
| | \----65----+ \----- EcC044345.10 [Eucalyptus camaldulensis] (190)
/-55-+ | |
| | | \------------------------- Eucgr.F03303.1.p [Eucalyptus grandis] (94)
| | |
| | \----------------------------------------- (188)
/-69-+ |
| | \---------------------------------------------- evm.model.supercontig_6.327 [Carica papaya] (70)
| |
| \--------------------------------------------------- Eucgr.E03260.1.p [Eucalyptus grandis] (39)
|
| /----- Neem_21257_a_2 [Azadirachta indica] (11)
| /-100+
| | \----- Neem_1707_a_2 [Azadirachta indica] (95)
/-99-+ /-64-+
| | | | /----- orange1.1g032310m [Citrus sinensis] (64)
| | | \-100+
| | /-67-+ \----- Ciclev10017104m [Citrus clementina] (90)
| | | |
| | | | /----- Thecc1EG029832t1 [Theobroma cacao] (28)
| | | \----70---+
--99-+ \-----------------70----------------+ \----- evm.model.supercontig_27.40 [Carica papaya] (74)
| |
| | /----- Gh_A10G2217 [Gossypium hirsutum] (41)
| \------100-----+
| \----- Gorai.011G029400.1 [Gossypium raimondii] (55)
|
\------------------------------------------------------------- XP_010549337.1 [Tarenaya hassleriana] (14)
Root part of tree:
/------------------------------------------------------------------ Rsa1.0_03890.1_g00004.1 [Raphanus sativus] (1)
|
|------------------------------------------------------------------ RrC11030_p2 [Raphanus raphanistrum] (116)
|
| /------- GSBRNA2T00132295001 [Brassica napus] (2)
| /--100--+
| | \------- XP_013626500.1 [Brassica oleracea] (16)
| /--100-+
| | | /------- RrC59579_p1 [Raphanus raphanistrum] (9)
| | \--100--+
| /--100-+ \------- RrC3447_p1 [Raphanus raphanistrum] (120)
| | |
| /----------97---------+ \---------------------- XP_009132954.1 [Brassica rapa] (44)
| | |
| | \----------------------------- 676776618 [Sisymbrium irio] (50)
| |
| | /------- (200)
| | /----------60---------+
| | | \------- KFK24430.1 [Arabis alpina] (27)
| | |
| | |----------------------------- AT2G33810.1 [Arabidopsis thaliana] (6)
| | |
+ | | /------- Csa07g007510.1 [Camelina sativa] (7)
| | | /---95--+
| | | | \------- Csa05g021470.1 [Camelina sativa] (114)
| | | /--100-+
| | | | \--------------- Csa16g007310.1 [Camelina sativa] (111)
| | /---80--+--89--+
| | | | | /------- Carubv10024311m [Capsella rubella] (97)
| | | | \------100-----+
| | | | \------- Cagra.1195s0023.1.p [Capsella grandiflora] (118)
| /--100--+ | |
| | | | | /------- Araha.2637s0018.1.p [Arabidopsis halleri] (42)
| | | /--78--+ |---------100---------+
| | | | | | \------- 482334 [Arabidopsis lyrata] (43)
| | | | | |
| | | | | \----------------------------- Bostr.23794s0714.1.p [Boechera stricta] (130)
| | |--99--+ |
| | | | \------------------------------------- Tp4g16200 [Thellungiella parvula] (87)
| | | |
| | | \-------------------------------------------- Thhalv10017406m [Eutrema salsugineum] (150)
| | |
| | | /------- Rsa1.0_00948.1_g00009.1 [Raphanus sativus] (4)
| | |--------------------100--------------------+
\--100-+ | \------- RrC14979_p1 [Raphanus raphanistrum] (65)
| |
| | /------- GSBRNA2T00038835001 [Brassica napus] (10)
| | /--100--+
| | | \------- XP_013637096.1 [Brassica oleracea] (79)
| \----------------100----------------+
| | /------- GSBRNA2T00095270001 [Brassica napus] (76)
| \--100--+
| \------- XP_009143829.1 [Brassica rapa] (140)
|
| /---------------------- XP_013632192.1 [Brassica oleracea] (8)
| |
\-----------------88-----------------+ /--------------- GSBRNA2T00020688001 [Brassica napus] (38)
| |
\--87--+ /------- XP_009141347.1 [Brassica rapa] (57)
\---84--+
\------- GSBRNA2T00064576001 [Brassica napus] (100)
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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