PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Phylogenetic Tree for
Castanea mollissima
B3 Family
Phylogenetic tree for domain ? help Back to Top 

      /------------------------------------------------------------------- augustus_masked-scaffold06912-abinit-gene-0.2-mRNA-1/340-428  (1)
      |                                                                               
      |------------------------------------------------------------------- maker-scaffold06912-snap-gene-0.15-mRNA-1/303-384             (63)
      |                                                                               
      |                                                             /----- maker-scaffold03587-augustus-gene-0.14-mRNA-1/712-788         (2)
      |                                                        /-100+                 
      |                                                        |    \----- maker-scaffold06670-snap-gene-0.21-mRNA-1/34-113              (20)
      |                                                        |                      
      |                    /----------------100----------------+---------- augustus_masked-scaffold13677-abinit-gene-0.0-mRNA-1/35-101   (13)
      |                    |                                   |                      
      |                    |                                   \---------- augustus_masked-scaffold24066-abinit-gene-0.0-mRNA-1/35-113   (46)
      |                    |                                                          
      |                    |                                        /----- maker-scaffold03541-snap-gene-0.19-mRNA-1/7-64                (4)
      |                    |                                   /-98-+                 
      |                    |                                   |    \----- maker-scaffold00437-snap-gene-0.38-mRNA-1/9-86                (79)
      |                    |                              /-99-+                      
      |                    |                              |    |    /----- augustus_masked-scaffold00324-abinit-gene-1.1-mRNA-1/94-161   (15)
      |                    |                              |    \-80-+                 
      |                    |                              |         \----- augustus_masked-scaffold00236-abinit-gene-1.7-mRNA-1/1-78     (28)
      |                    |    /-----------100-----------+                           
      |                    |    |                         |         /----- maker-scaffold02165-snap-gene-0.31-mRNA-1/7-83                (19)
      |                    |    |                         |    /-86-+                 
      |                    |    |                         |    |    \----- snap_masked-scaffold04348-abinit-gene-0.7-mRNA-1/7-61         (41)
      |                    |    |                         \-100+                      
      |                    |    |                              \---------- maker-scaffold13933-snap-gene-0.8-mRNA-1/9-85                 (64)
      |                    |    |                                                     
      |                    |    |                                   /----- maker-scaffold03034-snap-gene-0.19-mRNA-1/19-110              (7)
      |                    |    |              /---------100--------+                 
      |              /--71-+    |              |                    \----- maker-scaffold07005-augustus-gene-0.14-mRNA-1/20-105          (32)
      |              |     |    |              |                                      
      |              |     |    |              |                    /----- maker-scaffold15291-snap-gene-0.9-mRNA-1/4-83                 (8)
      |              |     |-99-+              |          /----99---+                 
      |              |     |    |              |          |         \----- maker-scaffold23790-augustus-gene-0.4-mRNA-1/1-77             (65)
      |              |     |    |         /-83-+          |                           
      |              |     |    |         |    |    /--53-+    /---------- snap_masked-scaffold15166-abinit-gene-0.2-mRNA-1/5-80         (9)
      |              |     |    |         |    |    |     |    |                      
      |              |     |    |         |    |    |     \-99-+    /----- maker-scaffold07005-augustus-gene-0.15-mRNA-1/29-119          (14)
      |              |     |    |         |    |    |          \-82-+                 
      |              |     |    |         |    \-51-+               \----- augustus_masked-scaffold03034-abinit-gene-0.4-mRNA-1/29-98    (31)
      |              |     |    |    /-89-+         |                                 
      |              |     |    |    |    |         |               /----- augustus_masked-scaffold06912-abinit-gene-0.1-mRNA-1/36-117   (70)
      |              |     |    |    |    |         \------100------+                 
      |         /-99-+     |    |    |    |                         \----- snap_masked-scaffold01179-abinit-gene-0.35-mRNA-1/15-71       (73)
      |         |    |     |    \-70-+    |                                           
      |         |    |     |         |    \------------------------------- maker-scaffold06912-snap-gene-0.15-mRNA-1/6-96                (37)
      |         |    |     |         |                                                
      |         |    |     |         \------------------------------------ augustus_masked-scaffold06912-abinit-gene-0.2-mRNA-1/45-127   (76)
      |         |    |     |                                                          
      |         |    |     \---------------------------------------------- maker-scaffold03587-augustus-gene-0.14-mRNA-1/22-108          (50)
      |         |    |                                                                
      |         |    |                                              /----- maker-scaffold01179-augustus-gene-0.45-mRNA-1/16-102          (17)
      |         |    |                                              |                 
      |         |    |                                         /-77-+----- maker-scaffold05550-snap-gene-0.14-mRNA-1/18-94               (35)
      |         |    |                                         |    |                 
      |         |    |                                         |    \----- augustus_masked-scaffold13677-abinit-gene-0.0-mRNA-1/378-467  (56)
      |         |    \--------------------61-------------------+                      
      |         |                                              |    /----- maker-scaffold05156-augustus-gene-0.10-mRNA-1/22-75           (24)
      |         |                                              \-63-+                 
      |         |                                                   \----- maker-scaffold02240-snap-gene-0.30-mRNA-1/16-91               (47)
      |         |                                                                     
      |         |                                                   /----- maker-scaffold02319-augustus-gene-0.30-mRNA-1/333-432         (3)
      +         |                                              /-93-+                 
      |         |                                              |    \----- maker-scaffold00541-snap-gene-1.11-mRNA-1/256-356             (10)
      |         |                                         /-100+                      
      |         |                                         |    \---------- augustus_masked-scaffold01744-abinit-gene-0.12-mRNA-1/241-340 (30)
      |         |                                   /--98-+                           
      |         |                                   |     \--------------- maker-scaffold03298-augustus-gene-0.21-mRNA-1/121-222         (36)
      |         |                                   |                                 
      |         |                              /-62-+               /----- augustus_masked-scaffold01591-abinit-gene-0.7-mRNA-1/37-140   (23)
      |         |                              |    |          /-89-+                 
      |         |                              |    |          |    \----- snap_masked-scaffold01374-abinit-gene-0.37-mRNA-1/96-200      (60)
      |         |                              |    \----97----+                      
      |         |--------------100-------------+               \---------- snap_masked-scaffold00728-abinit-gene-0.19-mRNA-1/61-163      (69)
      |         |                              |                                      
      |         |                              |          /--------------- augustus_masked-scaffold02249-abinit-gene-0.4-mRNA-1/127-213  (43)
      |         |                              |          |                           
      |         |                              \----90----+    /---------- snap_masked-scaffold09633-abinit-gene-0.8-mRNA-1/2-107        (48)
      |         |                                         |    |                      
      |         |                                         \-100+    /----- augustus_masked-scaffold01299-abinit-gene-0.0-mRNA-1/122-227  (57)
      |         |                                              \-57-+                 
      |         |                                                   \----- augustus_masked-scaffold01299-abinit-gene-0.1-mRNA-1/123-228  (67)
      |         |                                                                     
      |         |                              /-------------------------- augustus_masked-scaffold00324-abinit-gene-1.1-mRNA-1/274-351  (6)
      |         |                              |                                      
      |         |                              |               /---------- maker-scaffold04348-snap-gene-0.24-mRNA-1/272-354             (33)
      |         |                              |               |                      
      |         |                              |          /-100+    /----- maker-scaffold00274-snap-gene-0.59-mRNA-1/149-249             (42)
      |         |                              |          |    \-100+                 
      |         |                              |          |         \----- maker-scaffold00963-snap-gene-0.46-mRNA-1/133-215             (44)
      |         |                              |    /--99-+                           
      |    /-71-+--------------80--------------+    |     |         /----- maker-scaffold05550-snap-gene-0.14-mRNA-1/348-424             (51)
      |    |    |                              |    |     \----70---+                 
      |    |    |                              |-74-+               \----- maker-scaffold02141-snap-gene-0.26-mRNA-1/345-449             (53)
      |    |    |                              |    |                                 
      |    |    |                              |    \--------------------- augustus_masked-scaffold13677-abinit-gene-0.0-mRNA-1/568-647  (72)
      |    |    |                              |                                      
      |    |    |                              |-------------------------- maker-scaffold02240-snap-gene-0.30-mRNA-1/472-535             (38)
      |    |    |                              |                                      
      |    |    |                              \-------------------------- maker-scaffold05156-augustus-gene-0.10-mRNA-1/218-312         (74)
      |    |    |                                                                     
      |    |    |                                                   /----- augustus_masked-scaffold24066-abinit-gene-0.0-mRNA-1/269-355  (11)
      |    |    |------------------------100------------------------+                 
      |    |    |                                                   \----- augustus_masked-scaffold13677-abinit-gene-0.0-mRNA-1/236-320  (39)
      |    |    |                                                                     
      |    |    |                                              /---------- maker-scaffold04251-augustus-gene-0.18-mRNA-2/212-282         (12)
      |    |    |                                              |                      
      |    |    |                                         /-99-+    /----- maker-scaffold27420-snap-gene-0.3-mRNA-1/1-57                 (62)
      |    |    |                                         |    \-98-+                 
      |    |    |                                   /--96-+         \----- maker-scaffold04251-augustus-gene-0.18-mRNA-2/52-135          (71)
      |    |    |                                   |     |                           
      |    |    |                                   |     \--------------- maker-scaffold02244-snap-gene-0.26-mRNA-1/129-210             (78)
      |    |    |                                   |                                 
      |    |    |                              /-72-+--------------------- maker-scaffold00454-snap-gene-0.46-mRNA-1/53-142              (21)
      |    |    |                              |    |                                 
      |    |    |                              |    |--------------------- augustus_masked-scaffold02244-abinit-gene-0.3-mRNA-1/25-113   (66)
      |    |    |--------------100-------------+    |                                 
      |    |    |                              |    \--------------------- maker-scaffold02244-snap-gene-0.24-mRNA-1/95-184              (75)
      |    |    |                              |                                      
      |    |    |                              \-------------------------- maker-scaffold01677-snap-gene-0.38-mRNA-1/145-218             (80)
      |    |    |                                                                     
      |    |    |--------------------------------------------------------- maker-scaffold03541-snap-gene-0.19-mRNA-1/432-529             (16)
      \-81-+    |                                                                     
           |    |--------------------------------------------------------- maker-scaffold03541-snap-gene-0.19-mRNA-1/182-279             (18)
           |    |                                                                     
           |    |                                                   /----- maker-scaffold13933-snap-gene-0.8-mRNA-1/229-326              (22)
           |    |------------------------100------------------------+                 
           |    |                                                   \----- maker-scaffold04348-snap-gene-0.24-mRNA-1/57-156              (58)
           |    |                                                                     
           |    |--------------------------------------------------------- maker-scaffold02141-snap-gene-0.26-mRNA-1/167-264             (26)
           |    |                                                                     
           |    |                                                   /----- maker-scaffold03587-augustus-gene-0.14-mRNA-1/537-619         (34)
           |    |------------------------100------------------------+                 
           |    |                                                   \----- maker-scaffold03587-augustus-gene-0.14-mRNA-1/319-402         (61)
           |    |                                                                     
           |    |--------------------------------------------------------- maker-scaffold00437-snap-gene-0.38-mRNA-1/194-287             (40)
           |    |                                                                     
           |    |--------------------------------------------------------- maker-scaffold05550-snap-gene-0.14-mRNA-1/217-301             (52)
           |    |                                                                     
           |    \--------------------------------------------------------- snap_masked-scaffold09489-abinit-gene-0.6-mRNA-1/34-121       (81)
           |                                                                          
           |                                                   /---------- snap_masked-scaffold15291-abinit-gene-0.3-mRNA-1/156-242      (5)
           |                                                   |                      
           |                                              /-97-+    /----- maker-scaffold15291-snap-gene-0.9-mRNA-1/168-232              (29)
           |                                              |    \-100+                 
           |                                        /--95-+         \----- augustus_masked-scaffold35799-abinit-gene-0.0-mRNA-1/9-73     (68)
           |                                        |     |                           
           |                                        |     \--------------- maker-scaffold23790-augustus-gene-0.4-mRNA-1/176-264          (77)
           |                                        |                                 
           |                                        |               /----- snap_masked-scaffold15166-abinit-gene-0.4-mRNA-1/10-84        (25)
           |                                        |          /-68-+                 
           |                                        |          |    \----- snap_masked-scaffold03034-abinit-gene-0.6-mRNA-1/55-146       (49)
           |                                        |     /-100+                      
           \-------------------99-------------------+     |    \---------- maker-scaffold07005-augustus-gene-0.15-mRNA-1/193-283         (59)
                                                    |--81-+                           
                                                    |     |         /----- augustus_masked-scaffold06912-abinit-gene-0.1-mRNA-1/293-388  (27)
                                                    |     \---100---+                 
                                                    |               \----- snap_masked-scaffold01179-abinit-gene-0.35-mRNA-1/237-332     (54)
                                                    |                                 
                                                    |               /----- maker-scaffold07005-augustus-gene-0.14-mRNA-1/167-260         (45)
                                                    \-------76------+                 
                                                                    \----- maker-scaffold11283-augustus-gene-0.9-mRNA-1/90-166           (55)
Phylogenetic tree for protein ? help Back to Top 

      /------------------------------------------------------------------- augustus_masked-scaffold13677-abinit-gene-0.0-mRNA-1  (1)
      |                                                                               
      |------------------------------------------------------------------- augustus_masked-scaffold24066-abinit-gene-0.0-mRNA-1  (24)
      |                                                                               
      |                                                            /------ maker-scaffold00541-snap-gene-1.11-mRNA-1             (2)
      |                                                       /-100+                  
      |                                                       |    \------ maker-scaffold02319-augustus-gene-0.30-mRNA-1         (47)
      |                                                 /-100-+                       
      |                                                 |     \----------- augustus_masked-scaffold01744-abinit-gene-0.12-mRNA-1 (37)
      |                                                 |                             
      |                                            /-99-+          /------ snap_masked-scaffold00728-abinit-gene-0.19-mRNA-1     (5)
      |                                            |    |     /-93-+                  
      |                                            |    |     |    \------ augustus_masked-scaffold01591-abinit-gene-0.7-mRNA-1  (26)
      |                                 /----100---+    \-100-+                       
      |                                 |          |          \----------- snap_masked-scaffold01374-abinit-gene-0.37-mRNA-1     (22)
      |                                 |          |                                  
      |                                 |          \---------------------- maker-scaffold03298-augustus-gene-0.21-mRNA-1         (28)
      |                                 |                                             
      |                                 |               /----------------- maker-scaffold01677-snap-gene-0.38-mRNA-1             (9)
      |                                 |               |                             
      |                /-------59-------+               |          /------ maker-scaffold02244-snap-gene-0.24-mRNA-1             (11)
      |                |                |          /-64-+     /-68-+                  
      |                |                |          |    |     |    \------ augustus_masked-scaffold02244-abinit-gene-0.3-mRNA-1  (49)
      |                |                |          |    \-100-+                       
      |                |                |    /--63-+          \----------- maker-scaffold00454-snap-gene-0.46-mRNA-1             (21)
      |                |                |    |     |                                  
      |                |                |    |     \---------------------- maker-scaffold02244-snap-gene-0.26-mRNA-1             (39)
      |                |                \-95-+                                        
      |                |                     |                     /------ maker-scaffold04251-augustus-gene-0.18-mRNA-2         (19)
      |                |                     \----------58---------+                  
      |                |                                           \------ maker-scaffold27420-snap-gene-0.3-mRNA-1              (20)
      |                |                                                              
      |                |                                /----------------- maker-scaffold23790-augustus-gene-0.4-mRNA-1          (3)
      |                |                                |                             
      |                |                           /-100+     /----------- snap_masked-scaffold15291-abinit-gene-0.3-mRNA-1      (18)
      |                |                           |    |     |                       
      |                |                           |    \-100-+    /------ augustus_masked-scaffold35799-abinit-gene-0.0-mRNA-1  (31)
      |                |                           |          \-100+                  
      |                |                           |               \------ maker-scaffold15291-snap-gene-0.9-mRNA-1              (44)
      |                |                     /--81-+                                  
      |                |                     |     |               /------ maker-scaffold03034-snap-gene-0.19-mRNA-1             (4)
      |                |                     |     |          /-100+                  
      |                |                     |     |          |    \------ maker-scaffold07005-augustus-gene-0.14-mRNA-1         (30)
      |                |                     |     \----98----+                       
      |                |                     |                \----------- maker-scaffold11283-augustus-gene-0.9-mRNA-1          (40)
      |                |                /-79-+                                        
      |                |                |    |                /----------- maker-scaffold07005-augustus-gene-0.15-mRNA-1         (7)
      |                |                |    |                |                       
      +                |                |    |                |----------- augustus_masked-scaffold03034-abinit-gene-0.4-mRNA-1  (16)
      |                |                |    |                |                       
      |                |                |    \-------100------+    /------ snap_masked-scaffold03034-abinit-gene-0.6-mRNA-1      (23)
      |                |          /--98-+                     |-100+                  
      |                |          |     |                     |    \------ snap_masked-scaffold15166-abinit-gene-0.4-mRNA-1      (51)
      |                |          |     |                     |                       
      |                |          |     |                     \----------- snap_masked-scaffold15166-abinit-gene-0.2-mRNA-1      (53)
      |                |          |     |                                             
      |                |    /--97-+     |                          /------ snap_masked-scaffold01179-abinit-gene-0.35-mRNA-1     (17)
      |                |    |     |     \------------100-----------+                  
      |                |    |     |                                \------ augustus_masked-scaffold06912-abinit-gene-0.1-mRNA-1  (32)
      |                |    |     |                                                   
      |                |    |     |                                /------ maker-scaffold06912-snap-gene-0.15-mRNA-1             (34)
      |          /--72-+    |     \---------------100--------------+                  
      |          |     |    |                                      \------ augustus_masked-scaffold06912-abinit-gene-0.2-mRNA-1  (38)
      |          |     |    |                                                         
      |          |     |    |                                      /------ maker-scaffold13933-snap-gene-0.8-mRNA-1              (6)
      |          |     |    |                      /-------72------+                  
      |          |     |-91-+                      |               \------ snap_masked-scaffold04348-abinit-gene-0.7-mRNA-1      (45)
      |          |     |    |                      |                                  
      |          |     |    |                      |          /----------- maker-scaffold00963-snap-gene-0.46-mRNA-1             (12)
      |          |     |    |                /--99-+          |                       
      |          |     |    |                |     |    /--99-+    /------ maker-scaffold02141-snap-gene-0.26-mRNA-1             (25)
      |          |     |    |                |     |    |     \-69-+                  
      |          |     |    |                |     |    |          \------ maker-scaffold04348-snap-gene-0.24-mRNA-1             (29)
      |          |     |    |                |     \-99-+                             
      |          |     |    |                |          |          /------ maker-scaffold02165-snap-gene-0.31-mRNA-1             (13)
      |          |     |    \-------99-------+          \----70----+                  
      |          |     |                     |                     \------ maker-scaffold00274-snap-gene-0.59-mRNA-1             (43)
      |          |     |                     |                                        
      |          |     |                     |                     /------ augustus_masked-scaffold00236-abinit-gene-1.7-mRNA-1  (8)
      |          |     |                     |                /-80-+                  
      |          |     |                     |                |    \------ augustus_masked-scaffold00324-abinit-gene-1.1-mRNA-1  (48)
      |          |     |                     \-------100------+                       
      |          |     |                                      |    /------ maker-scaffold00437-snap-gene-0.38-mRNA-1             (33)
      |     /-100+     |                                      \-100+                  
      |     |    |     |                                           \------ maker-scaffold03541-snap-gene-0.19-mRNA-1             (46)
      |     |    |     |                                                              
      |     |    |     |                                      /----------- snap_masked-scaffold09633-abinit-gene-0.8-mRNA-1      (10)
      |     |    |     |                                      |                       
      |     |    |     |                                /-100-+    /------ augustus_masked-scaffold01299-abinit-gene-0.0-mRNA-1  (35)
      |     |    |     |                                |     \-62-+                  
      |     |    |     |                           /-99-+          \------ augustus_masked-scaffold01299-abinit-gene-0.1-mRNA-1  (50)
      |     |    |     |                           |    |                             
      |     |    |     |-------------63------------+    \----------------- augustus_masked-scaffold02249-abinit-gene-0.4-mRNA-1  (41)
      |     |    |     |                           |                                  
      |     |    |     |                           \---------------------- snap_masked-scaffold09489-abinit-gene-0.6-mRNA-1      (15)
      \-100-+    |     |                                                              
            |    |     |                                           /------ maker-scaffold05550-snap-gene-0.14-mRNA-1             (14)
            |    |     |                                      /-76-+                  
            |    |     |                                      |    \------ maker-scaffold05156-augustus-gene-0.10-mRNA-1         (42)
            |    |     |------------------60------------------+                       
            |    |     |                                      \----------- maker-scaffold01179-augustus-gene-0.45-mRNA-1         (54)
            |    |     |                                                              
            |    |     \-------------------------------------------------- maker-scaffold02240-snap-gene-0.30-mRNA-1             (27)
            |    |                                                                    
            |    \-------------------------------------------------------- maker-scaffold03587-augustus-gene-0.14-mRNA-1         (36)
            |                                                                         
            \------------------------------------------------------------- maker-scaffold06670-snap-gene-0.21-mRNA-1             (52)