PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Phylogenetic Tree for
Castanea mollissima
C3H Family
Phylogenetic tree for domain ? help Back to Top 

      /------------------------------------------------------------------- maker-scaffold00229-snap-gene-0.48-mRNA-1/127-147             (1)
      |                                                                               
      |                /-------------------------------------------------- maker-scaffold07117-augustus-gene-0.11-mRNA-1/158-182         (2)
      |                |                                                              
      |                |-------------------------------------------------- maker-scaffold00547-augustus-gene-0.26-mRNA-1/402-428         (4)
      |                |                                                              
      |                |-------------------------------------------------- maker-scaffold00547-augustus-gene-0.26-mRNA-1/223-244         (5)
      |                |                                                              
      |                |                                         /-------- maker-scaffold01681-snap-gene-0.23-mRNA-1/85-110              (8)
      |                |                                         |                    
      |                |                                         |-------- maker-scaffold05639-augustus-gene-0.8-mRNA-1/52-77            (10)
      |                |--------------------74-------------------+                    
      |                |                                         |-------- maker-scaffold01951-augustus-gene-0.34-mRNA-1/53-77           (29)
      |                |                                         |                    
      |                |                                         \-------- maker-scaffold11466-snap-gene-0.6-mRNA-1/34-54                (30)
      |                |                                                              
      |                |                                         /-------- maker-scaffold01681-snap-gene-0.23-mRNA-1/368-392             (14)
      |                |                                /---80---+                    
      |                |                                |        \-------- maker-scaffold00547-augustus-gene-0.26-mRNA-1/451-473         (40)
      |                |                        /---72--+                             
      |                |                        |       \----------------- maker-scaffold00088-augustus-gene-1.42-mRNA-1/266-292         (54)
      |                |                /---91--+                                     
      |                |                |       \------------------------- maker-scaffold05639-augustus-gene-0.8-mRNA-1/375-398          (36)
      |                |       /---99---+                                             
      |                |       |        \--------------------------------- maker-scaffold01951-augustus-gene-0.34-mRNA-1/349-370         (70)
      |                |---97--+                                                      
      |                |       \------------------------------------------ maker-scaffold07117-augustus-gene-0.11-mRNA-1/259-283         (28)
      |                |                                                              
      |                |-------------------------------------------------- maker-scaffold01951-augustus-gene-0.34-mRNA-1/97-123          (16)
      |                |                                                              
      |                |-------------------------------------------------- maker-scaffold00547-augustus-gene-0.26-mRNA-1/176-198         (17)
      |                |                                                              
      |       /---80---+-------------------------------------------------- maker-scaffold06955-augustus-gene-0.10-mRNA-1/42-60           (19)
      |       |        |                                                              
      |       |        |-------------------------------------------------- snap_masked-scaffold00506-abinit-gene-0.17-mRNA-1/18-39       (24)
      |       |        |                                                              
      |       |        |-------------------------------------------------- maker-scaffold01681-snap-gene-0.23-mRNA-1/172-194             (26)
      |       |        |                                                              
      |       |        |-------------------------------------------------- maker-scaffold07117-augustus-gene-0.11-mRNA-1/210-236         (27)
      |       |        |                                                              
      |       |        |-------------------------------------------------- maker-scaffold02226-augustus-gene-0.29-mRNA-1/244-263         (31)
      |       |        |                                                              
      |       |        |-------------------------------------------------- maker-scaffold01951-augustus-gene-0.34-mRNA-1/300-326         (37)
      |       |        |                                                              
      |       |        |-------------------------------------------------- maker-scaffold07117-augustus-gene-0.11-mRNA-1/336-361         (39)
      |       |        |                                                              
      |       |        |                                         /-------- maker-scaffold05639-augustus-gene-0.8-mRNA-1/144-169          (41)
      |       |        |--------------------94-------------------+                    
      |       |        |                                         \-------- maker-scaffold01951-augustus-gene-0.34-mRNA-1/144-169         (68)
      |       |        |                                                              
      |       |        |-------------------------------------------------- maker-scaffold05639-augustus-gene-0.8-mRNA-1/328-352          (48)
      |       |        |                                                              
      |       |        |-------------------------------------------------- maker-scaffold00088-augustus-gene-1.42-mRNA-1/220-246         (55)
      |       |        |                                                              
      |       |        |-------------------------------------------------- maker-scaffold01681-snap-gene-0.23-mRNA-1/134-149             (58)
      |       |        |                                                              
      |       |        |-------------------------------------------------- maker-scaffold06955-augustus-gene-0.10-mRNA-1/91-114          (61)
      |       |        |                                                              
      |       |        |-------------------------------------------------- maker-scaffold00547-augustus-gene-0.26-mRNA-1/267-291         (67)
      |       |        |                                                              
      |       |        |-------------------------------------------------- maker-scaffold01681-snap-gene-0.23-mRNA-1/325-350             (71)
      |       |        |                                                              
      |       |        \-------------------------------------------------- maker-scaffold05639-augustus-gene-0.8-mRNA-1/99-123           (72)
      |       |                                                                       
      |       |                                                  /-------- maker-scaffold02933-snap-gene-0.14-mRNA-1/273-297             (3)
      |       |                                 /-------97-------+                    
      |       |                                 |                \-------- maker-scaffold02593-augustus-gene-0.19-mRNA-1/262-286         (43)
      |       |                                 |                                     
      |       |                                 |                /-------- maker-scaffold02933-snap-gene-0.14-mRNA-1/39-62               (6)
      |       |                                 |       /---98---+                    
      |       |                                 |       |        \-------- maker-scaffold02593-augustus-gene-0.19-mRNA-1/35-58           (74)
      |       |                                 |---89--+                             
      |       |                                 |       \----------------- snap_masked-scaffold07695-abinit-gene-0.16-mRNA-1/163-188     (75)
      |       |                                 |                                     
      +       |                                 |                /-------- maker-scaffold00818-augustus-gene-0.56-mRNA-1/82-106          (9)
      |       |                                 |-------59-------+                    
      |       |                                 |                \-------- maker-scaffold11770-snap-gene-0.5-mRNA-1/237-257              (33)
      |       |                                 |                                     
      |       |                                 |                /-------- maker-scaffold07695-snap-gene-0.19-mRNA-1/321-339             (11)
      |       |                                 |-------100------+                    
      |       |                                 |                \-------- snap_masked-scaffold07695-abinit-gene-0.16-mRNA-1/224-249     (50)
      |       |                                 |                                     
      |       |                                 |                /-------- augustus_masked-scaffold04468-abinit-gene-0.6-mRNA-1/141-161  (15)
      |       |                                 |                |                    
      |       |                                 |       /---53---+-------- augustus_masked-scaffold01690-abinit-gene-0.5-mRNA-1/127-147  (56)
      |       |                                 |       |        |                    
      |       |                                 |       |        \-------- augustus_masked-scaffold06090-abinit-gene-0.2-mRNA-1/88-108   (73)
      |       |                                 |       |                             
      |---97--+                                 |       |----------------- augustus_masked-scaffold10368-abinit-gene-0.2-mRNA-1/279-299  (20)
      |       |                                 |       |                             
      |       |                                 |---63--+----------------- augustus_masked-scaffold00485-abinit-gene-0.10-mRNA-1/270-290 (22)
      |       |                                 |       |                             
      |       |                                 |       |----------------- augustus_masked-scaffold02781-abinit-gene-0.0-mRNA-1/127-147  (52)
      |       |                                 |       |                             
      |       |----------------54---------------+       |        /-------- augustus_masked-scaffold00079-abinit-gene-1.8-mRNA-1/278-298  (66)
      |       |                                 |       \---97---+                    
      |       |                                 |                \-------- augustus_masked-scaffold00481-abinit-gene-0.5-mRNA-1/314-334  (69)
      |       |                                 |                                     
      |       |                                 |------------------------- augustus_masked-scaffold07720-abinit-gene-0.1-mRNA-1/135-160  (18)
      |       |                                 |                                     
      |       |                                 |                /-------- maker-scaffold02933-snap-gene-0.14-mRNA-1/106-131             (21)
      |       |                                 |-------92-------+                    
      |       |                                 |                \-------- maker-scaffold02593-augustus-gene-0.19-mRNA-1/100-124         (25)
      |       |                                 |                                     
      |       |                                 |------------------------- maker-scaffold03602-snap-gene-0.18-mRNA-1/307-328             (23)
      |       |                                 |                                     
      |       |                                 |------------------------- maker-scaffold04505-augustus-gene-0.13-mRNA-1/268-293         (34)
      |       |                                 |                                     
      |       |                                 |------------------------- maker-scaffold00818-augustus-gene-0.56-mRNA-1/225-249         (38)
      |       |                                 |                                     
      |       |                                 |------------------------- maker-scaffold02226-augustus-gene-0.29-mRNA-1/398-425         (44)
      |       |                                 |                                     
      |       |                                 |------------------------- maker-scaffold00818-augustus-gene-0.56-mRNA-1/147-166         (46)
      |       |                                 |                                     
      |       |                                 |------------------------- maker-scaffold11466-snap-gene-0.6-mRNA-1/143-165              (47)
      |       |                                 |                                     
      |       |                                 |------------------------- snap_masked-scaffold07695-abinit-gene-0.16-mRNA-1/89-113      (51)
      |       |                                 |                                     
      |       |                                 |------------------------- maker-scaffold01795-snap-gene-0.38-mRNA-1/92-119              (53)
      |       |                                 |                                     
      |       |                                 |------------------------- augustus_masked-scaffold01775-abinit-gene-0.7-mRNA-1/307-331  (60)
      |       |                                 |                                     
      |       |                                 \------------------------- augustus_masked-scaffold01775-abinit-gene-0.7-mRNA-1/270-294  (64)
      |       |                                                                       
      |       |----------------------------------------------------------- maker-scaffold18790-augustus-gene-0.4-mRNA-1/542-562          (7)
      |       |                                                                       
      |       |----------------------------------------------------------- maker-scaffold04863-augustus-gene-0.19-mRNA-1/59-81           (12)
      |       |                                                                       
      |       |                                                  /-------- maker-scaffold00818-snap-gene-0.59-mRNA-1/85-106              (13)
      |       |                                         /---100--+                    
      |       |                                         |        \-------- maker-scaffold00700-augustus-gene-0.43-mRNA-1/148-170         (49)
      |       |                                         |                             
      |       |                                         |        /-------- maker-scaffold11466-snap-gene-0.6-mRNA-1/3-26                 (45)
      |       |--------------------54-------------------+---72---+                    
      |       |                                         |        \-------- maker-scaffold11770-snap-gene-0.5-mRNA-1/298-320              (59)
      |       |                                         |                             
      |       |                                         \----------------- maker-scaffold00669-augustus-gene-0.35-mRNA-1/169-188         (57)
      |       |                                                                       
      |       |                                                  /-------- maker-scaffold05349-augustus-gene-0.22-mRNA-1/201-226         (35)
      |       |------------------------100-----------------------+                    
      |       |                                                  \-------- snap_masked-scaffold12258-abinit-gene-0.3-mRNA-1/198-223      (62)
      |       |                                                                       
      |       |----------------------------------------------------------- maker-scaffold11770-snap-gene-0.5-mRNA-1/175-197              (42)
      |       |                                                                       
      |       \----------------------------------------------------------- maker-scaffold02961-snap-gene-0.26-mRNA-1/1559-1582           (63)
      |                                                                               
      |                                                          /-------- maker-scaffold07229-snap-gene-0.10-mRNA-1/142-163             (32)
      \----------------------------97----------------------------+                    
                                                                 \-------- maker-scaffold07150-snap-gene-0.5-mRNA-1/161-182              (65)
Phylogenetic tree for protein ? help Back to Top 

      /------------------------------------------------------------------- maker-scaffold07229-snap-gene-0.10-mRNA-1             (1)
      |                                                                               
      |------------------------------------------------------------------- maker-scaffold07150-snap-gene-0.5-mRNA-1              (10)
      |                                                                               
      |                                                           /------- maker-scaffold01681-snap-gene-0.23-mRNA-1             (2)
      |                                            /------60------+                   
      |                                            |              \------- maker-scaffold00547-augustus-gene-0.26-mRNA-1         (34)
      |                                            |                                  
      |                                            |      /--------------- maker-scaffold02961-snap-gene-0.26-mRNA-1             (4)
      |                                            |      |                           
      |                                            |--98--+       /------- maker-scaffold04505-augustus-gene-0.13-mRNA-1         (11)
      |                                            |      \--100--+                   
      |                                            |              \------- augustus_masked-scaffold01775-abinit-gene-0.7-mRNA-1  (37)
      |                                            |                                  
      |                                            |---------------------- maker-scaffold00088-augustus-gene-1.42-mRNA-1         (8)
      |                                            |                                  
      |                             /------53------+              /------- maker-scaffold06955-augustus-gene-0.10-mRNA-1         (14)
      |                             |              |------66------+                   
      |                             |              |              \------- maker-scaffold07117-augustus-gene-0.11-mRNA-1         (20)
      |                             |              |                                  
      |                             |              |              /------- maker-scaffold01795-snap-gene-0.38-mRNA-1             (22)
      |                             |              |      /---68--+                   
      |                             |              |      |       \------- maker-scaffold01951-augustus-gene-0.34-mRNA-1         (39)
      |                             |              |--72--+                           
      |                             |              |      \--------------- maker-scaffold05639-augustus-gene-0.8-mRNA-1          (29)
      |                             |              |                                  
      |                             |              \---------------------- snap_masked-scaffold00506-abinit-gene-0.17-mRNA-1     (36)
      |                             |                                                 
      |                             |                             /------- maker-scaffold00818-augustus-gene-0.56-mRNA-1         (3)
      |                             |                     /---88--+                   
      |                             |                     |       \------- snap_masked-scaffold07695-abinit-gene-0.16-mRNA-1     (38)
      |                             |              /--75--+                           
      |                             |              |      \--------------- maker-scaffold07695-snap-gene-0.19-mRNA-1             (33)
      |                             |              |                                  
      |                             |------57------+              /------- maker-scaffold02593-augustus-gene-0.19-mRNA-1         (5)
      |                             |              |      /---94--+                   
      +                             |              |      |       \------- maker-scaffold02933-snap-gene-0.14-mRNA-1             (19)
      |                     /---59--+              \--96--+                           
      |                     |       |                     \--------------- maker-scaffold00669-augustus-gene-0.35-mRNA-1         (26)
      |                     |       |                                                 
      |                     |       |------------------------------------- maker-scaffold11770-snap-gene-0.5-mRNA-1              (7)
      |                     |       |                                                 
      |                     |       |                             /------- augustus_masked-scaffold00485-abinit-gene-0.10-mRNA-1 (12)
      |                     |       |                     /--100--+                   
      |                     |       |                     |       \------- augustus_masked-scaffold10368-abinit-gene-0.2-mRNA-1  (30)
      |                     |       |      /------100-----+                           
      |                     |       |      |              |       /------- augustus_masked-scaffold00079-abinit-gene-1.8-mRNA-1  (13)
      |                     |       |      |              \--100--+                   
      |                     |       |      |                      \------- augustus_masked-scaffold00481-abinit-gene-0.5-mRNA-1  (31)
      |                     |       |      |                                          
      |                     |       |--100-+                      /------- augustus_masked-scaffold01690-abinit-gene-0.5-mRNA-1  (18)
      |                     |       |      |              /--100--+                   
      |              /--51--+       |      |              |       \------- augustus_masked-scaffold04468-abinit-gene-0.6-mRNA-1  (23)
      |              |      |       |      |       /--90--+                           
      |              |      |       |      |       |      \--------------- augustus_masked-scaffold02781-abinit-gene-0.0-mRNA-1  (21)
      |              |      |       |      \---91--+                                  
      |              |      |       |              \---------------------- augustus_masked-scaffold06090-abinit-gene-0.2-mRNA-1  (24)
      |              |      |       |                                                 
      |              |      |       \------------------------------------- maker-scaffold18790-augustus-gene-0.4-mRNA-1          (35)
      |              |      |                                                         
      |              |      |                                     /------- snap_masked-scaffold12258-abinit-gene-0.3-mRNA-1      (6)
      |              |      |                             /--100--+                   
      |              |      |                             |       \------- maker-scaffold05349-augustus-gene-0.22-mRNA-1         (17)
      |      /--100--+      |                      /--94--+                           
      |      |       |      |                      |      \--------------- maker-scaffold04863-augustus-gene-0.19-mRNA-1         (25)
      |      |       |      |                      |                                  
      |      |       |      \----------78----------+---------------------- maker-scaffold02226-augustus-gene-0.29-mRNA-1         (15)
      |      |       |                             |                                  
      |      |       |                             |              /------- maker-scaffold00818-snap-gene-0.59-mRNA-1             (27)
      |      |       |                             \------100-----+                   
      |      |       |                                            \------- maker-scaffold00700-augustus-gene-0.43-mRNA-1         (32)
      \--68--+       |                                                                
             |       |                                            /------- augustus_masked-scaffold07720-abinit-gene-0.1-mRNA-1  (9)
             |       |                                            |                   
             |       \---------------------64---------------------+------- maker-scaffold03602-snap-gene-0.18-mRNA-1             (28)
             |                                                    |                   
             |                                                    \------- maker-scaffold11466-snap-gene-0.6-mRNA-1              (40)
             |                                                                        
             \------------------------------------------------------------ maker-scaffold00229-snap-gene-0.48-mRNA-1             (16)