PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 0100010593
Common NameOT_ostta01g06050
Organism
Ostreococcus tauri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family MYB_related
Protein Properties Length: 132aa    MW: 14471.7 Da    PI: 11.1471
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
0100010593genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.14.8e-0961111146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46 
                      + ++T+eE   l ++vk +G+g W++I +         +Rt  ++k++w++
       0100010593  61 KTKFTPEEVAALRQGVKVYGKGAWAKILQAHHavfdtHKRTQVDLKDKWRN 111
                      569************************9988888***89***********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.2E-1453118IPR009057Homeodomain-like
PROSITE profilePS5129414.79956117IPR017930Myb domain
SuperFamilySSF466892.99E-1358114IPR009057Homeodomain-like
SMARTSM007176.4E-760115IPR001005SANT/Myb domain
PfamPF002491.7E-761111IPR001005SANT/Myb domain
CDDcd116602.60E-1963114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 132 aa     Download sequence    Send to blast
MPKSSQPAKK RLRSVPVEDD IEDVEVPTAP ASPALGAARP TSPSRTVVVP RPNYAKVRRR  60
KTKFTPEEVA ALRQGVKVYG KGAWAKILQA HHAVFDTHKR TQVDLKDKWR NIENKEAKAV  120
MIALANSAAR A*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15762RRRKTK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003074656.24e-86SANT/Myb domain
TrEMBLA0A090LYC01e-84A0A090LYC0_OSTTA; SANT/Myb domain
TrEMBLA0A1Y5I2I64e-89A0A1Y5I2I6_OSTTA; Uncharacterized protein
STRINGA0A090LYC02e-85(Ostreococcus tauri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP650666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.25e-12MYB_related family protein
Publications ? help Back to Top
  1. Derelle E, et al.
    Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features.
    Proc. Natl. Acad. Sci. U.S.A., 2006. 103(31): p. 11647-52
    [PMID:16868079]