PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information? help Back to Top

TF ID

0200010383

Organism

Taxonomic ID

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus

Family

Protein Properties

Length: 116aa MW: 13623 Da PI: 10.2093

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
0200010383	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	73.3	3e-23	2	51	4	52
RWP-RK 4 eisledlskyFs.lpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++sl++l + F l+i+dAAkeLg++ T+LK++CR+yGI RWPhR++ksl 0200010383 2 NLSLQQLTRLFGvLKIEDAAKELGIGITALKKRCREYGIYRWPHRQLKSL 51 79999*999538********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	15.994	1	72	IPR003035	RWP-RK domain
Pfam	PF02042	7.4E-19	2	51	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 116 aa Download sequence Send to blast
MNLSLQQLTR LFGVLKIEDA AKELGIGITA LKKRCREYGI YRWPHRQLKS LDNLIDELDK 60 LKFGDRDDTC VKEAIVQLKY YKQKIVMDPC YKIPQSVFRL RQAQFKVLRY SNRQA*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_001416406.1	8e-50	RWP-RK domain-containing protein
TrEMBL	A4RSZ7	2e-48	A4RSZ7_OSTLU; RWP-RK domain-containing protein
STRING	ABO94699	3e-49	(Ostreococcus 'lucimarinus')

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP84	16	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18790.1	4e-19	RWP-RK domain-containing protein