PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 0200010427
Common NameOt02g04270, OT_ostta02g02260
Organism
Ostreococcus tauri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family HB-other
Protein Properties Length: 97aa    MW: 10978.3 Da    PI: 4.4502
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
0200010427genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox31.82.4e-104491955
                HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHH.HHHHHHHHHHHH CS
    Homeobox  9 keqleeLeelFeknrypsaeereeLAkklgLterq.VkvWFqNrRake 55
                +e l++L e++ekn+yp+++e   LA++l+ +++q +  +FqN R++ 
  0200010427 44 SEVLDRLTEEYEKNPYPTETELDALARELNAPDSQkIVSFFQNMRIRS 91
                67899************************9988765999******995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000862.67E-94091No hitNo description
SuperFamilySSF466894.19E-84191IPR009057Homeodomain-like
PfamPF000466.4E-84491IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.8E-94490IPR009057Homeodomain-like
PROSITE profilePS500719.0054794IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 97 aa     Download sequence    Send to blast
MDPLSPAITF FDKEGKGRTS YIGSLVPEKL FYPTPGLWFT NQGSEVLDRL TEEYEKNPYP  60
TETELDALAR ELNAPDSQKI VSFFQNMRIR SQLSSQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003075030.19e-66Homeobox domain
TrEMBLQ01EF12e-64Q01EF1_OSTTA; Homeobox domain
STRINGQ01EF14e-65(Ostreococcus tauri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1296533
Publications ? help Back to Top
  1. Derelle E, et al.
    Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features.
    Proc. Natl. Acad. Sci. U.S.A., 2006. 103(31): p. 11647-52
    [PMID:16868079]