PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 0300010273
Common NameOT_ostta03g02750
Organism
Ostreococcus tauri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family C3H
Protein Properties Length: 277aa    MW: 30002.8 Da    PI: 6.367
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
0300010273genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH47.13.8e-15108134127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                 yktelCr + ++GtC+yG++C+FaHg+
  0300010273 108 YKTELCRSWEESGTCRYGSKCQFAHGR 134
                 9************************96 PP
2zf-CCCH41.71.9e-13146170125
                 --S---SGGGGTS--TTTTT-SS-S CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaH 25 
                 ykte Cr+fa+ G C+yG+rC+F+H
  0300010273 146 YKTEVCRTFAAQGSCPYGSRCRFIH 170
                 9************************ PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.3E-20103140IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-11104139IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-9107134IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.056107135IPR000571Zinc finger, CCCH-type
PfamPF006424.6E-12108134IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.6E-15141171IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-9142172IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.845145173IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-7145172IPR000571Zinc finger, CCCH-type
PfamPF006423.1E-10146170IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051511Biological Processnegative regulation of unidimensional cell growth
GO:1901347Biological Processnegative regulation of secondary cell wall biogenesis
GO:0003729Molecular FunctionmRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MYDEIPTAEV LNAPQSPMYA HYGSPTLVQS PQRAPGSPYG THEHDAEGHS RSPGSSFGVN  60
LTPSQSPVYG GYSDHRVDSG RSLSASPAYG QHPSSPSTGS PKQQHSLYKT ELCRSWEESG  120
TCRYGSKCQF AHGRDELRPV LRHPKYKTEV CRTFAAQGSC PYGSRCRFIH YRAPEVEGTT  180
VTHRTALSAL MSGKSPNAHT ADWSDTFLAT PAPLDPRPAT RAAAPPDSPD DSPISDETAD  240
ISDAISDDQA DDLDLRRLPI FASIAASPDR DIFDRR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1m9o_A2e-2899170172Tristetraproline
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022838502.10.0Zinc finger, CCCH-type
TrEMBLA0A1Y5IA530.0A0A1Y5IA53_OSTTA; CCCH-type Zn-finger protein
STRINGA0A090LYN40.0(Ostreococcus tauri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP36231314
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.17e-27C3H family protein
Publications ? help Back to Top
  1. Derelle E, et al.
    Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features.
    Proc. Natl. Acad. Sci. U.S.A., 2006. 103(31): p. 11647-52
    [PMID:16868079]