PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information? help Back to Top

TF ID

0400010528

Common Name

Ot04g05280, OT_ostta04g05070

Organism

Taxonomic ID

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus

Family

Protein Properties

Length: 157aa MW: 16887 Da PI: 4.5749

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
0400010528	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	50.9	3.8e-16	9	100	6	93
NF-YB 6 rflPianvsrimkkvlPana....kiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrel 93 lP a v++++ +l + + k+s ++++++ ec sef+ v+sea++ + +e++ ti+++ +l al lGfe y ++ + + +e 0400010528 9 IGLPKATVAKMVTDALKSAGydamKMSTECRDLIVECCSEFVQAVSSEANEVSTKERKSTITAEHVLRALRVLGFEAYENECAIARDEAKEE 100 5689999999999998875444459*****************************************************98876665555555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	8.9E-31	5	140	IPR009072	Histone-fold
SuperFamily	SSF47113	1.93E-29	7	139	IPR009072	Histone-fold
Pfam	PF00808	3.0E-14	10	78	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 157 aa Download sequence Send to blast
MADAGDDEIG LPKATVAKMV TDALKSAGYD AMKMSTECRD LIVECCSEFV QAVSSEANEV 60 STKERKSTIT AEHVLRALRV LGFEAYENEC AIARDEAKEE ETEKREAKKK RKNFAMSAED 120 AIAMQQKLFA QAKARMAGEE PAEGEGTNVG SLGTLG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_B	1e-25	2	133	7	133	Transcription Regulator NC2 beta chain
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003079045.1	1e-109	Histone-fold
TrEMBL	A0A454XXJ2	1e-108	A0A454XXJ2_OSTTA; Histone-fold-containing protein
TrEMBL	Q01A73	1e-108	Q01A73_OSTTA; Histone-fold
STRING	Q01A73	1e-109	(Ostreococcus tauri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP2422	15	15

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23090.4	6e-26	nuclear factor Y, subunit B13

Link Out ? help Back to Top
Entrez Gene	9833959

Publications ? help Back to Top
Derelle E, et al. Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features. Proc. Natl. Acad. Sci. U.S.A., 2006. 103(31): p. 11647-52 [PMID:16868079]