PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 0400010557
Common NameOt04g05570, OT_ostta04g05420
Organism
Ostreococcus tauri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family C3H
Protein Properties Length: 425aa    MW: 46395.2 Da    PI: 8.3106
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
0400010557genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.51.1e-08178200426
                 ---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                 ++C+ff  +G+C  Gd Ck+aH+
  0400010557 178 APCKFFINNGYCAKGDACKYAHD 200
                 79********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.488174202IPR000571Zinc finger, CCCH-type
SMARTSM003563.7E-4175201IPR000571Zinc finger, CCCH-type
PfamPF006426.8E-6178200IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-6179201IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-6179205IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MTSASTSSRA VVGRIVGRRR VSARLAFYDL LVEASATVAW STTTDDGDDA SRGGRLGDRS  60
SSASLEGLGR SESVVVELVV KLGAEAFADE DALAAARREA FKLGNVVDVV GKLTRGRRDG  120
QTKSRSTAAW VLTCEGVNEV VEAWATANPG KCFARELYVR PAAPRDDSAE SKPGDTPAPC  180
KFFINNGYCA KGDACKYAHD RAVQREWIAA RKAKRREIAA TQYGDPHGDA VANKSARAVK  240
FAEWLRGKFG DDVLNAGTGI LDVAGGRGDI SFELFTKQGI KSTLVEPRAR KLNKQQHKWL  300
KAREKKFKTE SDDGASFQKP ELCEQIKTEF TSENWHLFKD CSVVIGMHPD QATEAIVDFA  360
NLYDKPFAIV PCCVFPELFN HRRDRQGAPV TERMALVEYL ADKTGGSVEY LDIEGANQVV  420
FRTS*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003079074.10.0Zinc finger, CCCH-type
TrEMBLQ01A440.0Q01A44_OSTTA; Zinc finger, CCCH-type
STRINGQ01A440.0(Ostreococcus tauri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP348811
Publications ? help Back to Top
  1. Derelle E, et al.
    Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features.
    Proc. Natl. Acad. Sci. U.S.A., 2006. 103(31): p. 11647-52
    [PMID:16868079]