PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 0700010421
Common NameOT_ostta07g04340
Organism
Ostreococcus tauri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family WRKY
Protein Properties Length: 181aa    MW: 20838.7 Da    PI: 9.2841
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
0700010421genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY58.31.5e-1881140155
                 ---SS-EEEEEEE--TT-SS-EEEEEE-ST..T---EEEEEE-SS...STTEEEEEEES- CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa..gCpvkkkversae...dpkvveitYege 55 
                 ldDg++WrKYG K+  g+++pr+YY+Cts   +   +k+ver a+   +++++ +tY g+
  0700010421  81 LDDGFRWRKYGNKMLSGQPHPRAYYKCTSGcgKGFLQKHVERIASkgrEKHLFLVTYYGR 140
                 59**************************98778889******875222678999999885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-1868139IPR003657WRKY domain
PROSITE profilePS5081117.47776128IPR003657WRKY domain
SuperFamilySSF1182901.18E-1577139IPR003657WRKY domain
SMARTSM007744.4E-1481146IPR003657WRKY domain
PfamPF031065.2E-1682139IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:1900150Biological Processregulation of defense response to fungus
GO:1900425Biological Processnegative regulation of defense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MRSFENTLAT LCEGFVDECE RVRRWEVMRD RGVIVVDRER MRVDADATGP VNASARERCK  60
KTSAARDETL RVTLKTSEEK LDDGFRWRKY GNKMLSGQPH PRAYYKCTSG CGKGFLQKHV  120
ERIASKGREK HLFLVTYYGR SPGCEQTEEL LEELYENFRA RARSGGENLV DSVQMTRRKC  180
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-14761401171Probable WRKY transcription factor 4
2lex_A5e-14761401171Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003080527.21e-130DNA-binding WRKY
TrEMBLA0A1Y5ICH71e-130A0A1Y5ICH7_OSTTA; DNA-binding protein WRKY1
STRINGA0A090M9V71e-130(Ostreococcus tauri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP4691626
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.15e-16WRKY DNA-binding protein 4
Publications ? help Back to Top
  1. Derelle E, et al.
    Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features.
    Proc. Natl. Acad. Sci. U.S.A., 2006. 103(31): p. 11647-52
    [PMID:16868079]