PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information? help Back to Top

TF ID

0800010130

Common Name

OT_ostta08g01330

Organism

Taxonomic ID

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus

Family

Protein Properties

Length: 255aa MW: 29533.1 Da PI: 10.0084

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
0800010130	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	21.2	8.4e-07	152	201	112	160
YABBY 112 vpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknW 160 p+ ++ k +++P+ay f ee qrik + P++ h e ++ W 0800010130 152 KPKvNVKGETKPKKAPTAYLVFAEEERQRIKLAEPELKHDEISQRLSRTW 201 3441356667889***************************9877766666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47095	9.03E-8	12	68	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	2.6E-7	14	70	IPR009071	High mobility group box domain
CDD	cd00084	6.31E-4	15	68	No hit	No description
PROSITE profile	PS50118	10.632	15	93	IPR009071	High mobility group box domain
SMART	SM00398	0.068	66	144	IPR009071	High mobility group box domain
SuperFamily	SSF47095	7.99E-10	70	145	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	5.0E-9	72	145	IPR009071	High mobility group box domain
CDD	cd00084	0.00313	72	140	No hit	No description
SuperFamily	SSF47095	8.12E-17	147	224	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	4.4E-15	162	224	IPR009071	High mobility group box domain
SMART	SM00398	2.2E-11	162	232	IPR009071	High mobility group box domain
CDD	cd01390	1.20E-11	163	226	No hit	No description
Pfam	PF00505	1.9E-15	163	226	IPR009071	High mobility group box domain
PROSITE profile	PS50118	15.71	163	226	IPR009071	High mobility group box domain

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MVEGKLDGEI LPAPPKRALT AYLIFCQRHR ERIMREIQPD PSSKFTKDQM QQVTTRLAGL 60 WNNISPKELK ETAYLIFCSR HRKDIMRQIH KDPLAKFTRA EMQQVTTTLA DMWNKISPSE 120 LASCREEAKV ELEKYRALKA EYRAPVYGPA KKPKVNVKGE TKPKKAPTAY LVFAEEERQR 180 IKLAEPELKH DEISQRLSRT WKAIDENEKR RYQARAEEQK QNLERQSILP SNSLAGEHLP 240 MMSMASYDID PRAI*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022840942.1	1e-180	High mobility group box domain
TrEMBL	A0A090N4U4	1e-178	A0A090N4U4_OSTTA; High mobility group box domain
STRING	A0A090N4U4	1e-179	(Ostreococcus tauri)

Publications ? help Back to Top
Derelle E, et al. Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features. Proc. Natl. Acad. Sci. U.S.A., 2006. 103(31): p. 11647-52 [PMID:16868079]