PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 0800010288
Common NameDEL, OT_ostta08g02940
Organism
Ostreococcus tauri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family E2F/DP
Protein Properties Length: 504aa    MW: 55334.2 Da    PI: 6.7363
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
0800010288genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP69.92.9e-2235100171
     E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                 rk+ksL+ l+++fl+++   +++ v+l+++a++L    v  +rRRiYD++NVLe+++++e+k+kn+++w+g
  0800010288  35 RKDKSLWTLCERFLTIYGDGSKESVSLDDAATRL---GV--ERRRIYDVANVLESVEVLERKAKNQYTWHG 100
                 79********************************...**..****************************98 PP
2E2F_TDP61.41.4e-19191270169
     E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvse......dvknkrRRiYDilNVLealnliek.....kekneirw 69 
                 r+eksL+ll+qkf++l+  s+ ++v+l+++a+ ++ e      + k+k RR+YDi+N+L +l+li k     ++k+++ w
  0800010288 191 RREKSLGLLSQKFVQLFLASKMNVVSLETAARIIMGEddddeaKLKTKIRRLYDIANILCSLRLIRKvhvgeTRKPAFLW 270
                 689********************************999*****999*********************9999999999999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.5E-2531101IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.64E-153499IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.5E-2835100IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023195.2E-2036100IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.104.2E-20188271IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.6E-31191272IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467855.58E-11193271IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023191.6E-17193271IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0032876Biological Processnegative regulation of DNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    Send to blast
MNGDGGVESS RASGGTDVPG EDAARTRATP SATSRKDKSL WTLCERFLTI YGDGSKESVS  60
LDDAATRLGV ERRRIYDVAN VLESVEVLER KAKNQYTWHG VRRLPECLKR LKESGLREFG  120
TDVELDGSTS EGRDGEKEDG TARGGDASDR SSPTNSSTIN LDAKQRGEKV TGTKFFGQGR  180
FAVSSASYDS RREKSLGLLS QKFVQLFLAS KMNVVSLETA ARIIMGEDDD DEAKLKTKIR  240
RLYDIANILC SLRLIRKVHV GETRKPAFLW LQRENSIAEL IAQGKGLMWF DKLNEEEEMR  300
LQASIIESKL DGNEVLMVDA ENKRRGAFYD SQTKSGSKRP RGRPRLPGGD VDALPSSVPP  360
LGASSMTPEE AARFNQLFAF TTSQLMAQYP LDVRADVNSI MAQSAMGNAN YLHLLAQSSV  420
AQAHAARRME NTAKGMSSDS SIDNTAMFVP PLPAFPAMLP AWGMSGLSYH SNHMEHMMRM  480
YETSLATISD NDPSHPDGKI AEQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yo2_A1e-45342643228Transcription factor E2F8
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00397DAPTransfer from AT3G48160Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6751040.0AY675104.1 Ostreococcus tauri DP-E2F-like protein (DEL) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003080858.10.0E2F Family
TrEMBLQ5SCB00.0Q5SCB0_OSTTA; DP-E2F-like protein
STRINGQ5SCB00.0(Ostreococcus tauri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP41861012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48160.16e-52DP-E2F-like 1
Publications ? help Back to Top
  1. Robbens S, et al.
    Genome-wide analysis of core cell cycle genes in the unicellular green alga Ostreococcus tauri.
    Mol. Biol. Evol., 2005. 22(3): p. 589-97
    [PMID:15537805]
  2. Derelle E, et al.
    Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features.
    Proc. Natl. Acad. Sci. U.S.A., 2006. 103(31): p. 11647-52
    [PMID:16868079]