PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 0900010151
Common NameOt09g01510, OT_ostta09g01510
Organism
Ostreococcus tauri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family CO-like
Protein Properties Length: 406aa    MW: 44976.8 Da    PI: 7.2846
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
0900010151genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box28.24e-09347442
    zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                ++C+ + + +++ +C  +++ lC+ C  + H+       H++vp+
  0900010151  3 TTCAACARRRATVYCAADDCALCAACDASVHSAnsvaarHKRVPI 47
                58*****************************66899999**9997 PP
2CCT39.61.8e-14250295143
         CCT   1 ReaallRYkeKrktRkF...eKkirYesRKavAesRpRvKGrFvkq 43 
                 R+a+l RY+ Kr++R+    + ++rY+ R+++A  R RvKGrFvk 
  0900010151 250 RQAQLDRYRAKRERRLLglnKQTVRYDGRQKLANARVRVKGRFVKV 295
                 99*************974434679********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003366.6E-8147IPR000315B-box-type zinc finger
PROSITE profilePS5011910.978147IPR000315B-box-type zinc finger
PfamPF006431.6E-7347IPR000315B-box-type zinc finger
PfamPF062031.3E-13250295IPR010402CCT domain
PROSITE profilePS510179.167253295IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MGTTCAACAR RRATVYCAAD DCALCAACDA SVHSANSVAA RHKRVPIEER EDTDGNAHER  60
NSAGSDTARY EQRRSFDRDV EMSYVRRTKG DSVNSVHADE WDVAEFLNLD ELEHGRRVNL  120
EPRNPRDSSN SDTILQDDPL GSLLDMDARD VSEFSFHQAD VASISAALNT VYSESRGENR  180
TDGGDDGGEL NLAFTRAHAR DHFAPKPSPL GQGTPALQYA GCANIPQNPK VQVPGDFFHG  240
VPKRVVSKER QAQLDRYRAK RERRLLGLNK QTVRYDGRQK LANARVRVKG RFVKVSPEEK  300
RAVIKSYQSC PDLSAMVDSA STEKRSIFAD DSVKWSRRAF GRSSDDSATS IDEYAMNRLD  360
TVSTIESRDK GIEKLEPHVL NGLRRGLGQT RHSQSEICLY ELAGV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003081141.10.0Zinc finger, B-box
TrEMBLQ011X00.0Q011X0_OSTTA; Zinc finger, B-box
STRINGQ011X00.0(Ostreococcus tauri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP741055
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49130.26e-06B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Derelle E, et al.
    Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features.
    Proc. Natl. Acad. Sci. U.S.A., 2006. 103(31): p. 11647-52
    [PMID:16868079]