PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

100288

Common Name

SELMODRAFT_450037, SELMODRAFT_450048, SmHAP3D-1.2, SmHAP3D-2.3

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

NF-YB

Protein Properties

Length: 126aa MW: 14077.8 Da PI: 5.0119

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
100288	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	181.9	5.3e-57	30	123	1	94
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 vreqdrflPian+srimkk+lPanaki+kdaketvqecvsefisf+tseasdkcqrekrktingddllwa++tlGfe+y+eplk+yl+kyre+ 100288 30 VREQDRFLPIANISRIMKKALPANAKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMSTLGFEEYLEPLKIYLQKYREVT 123 69******************************************************************************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	8.8E-55	26	122	IPR009072	Histone-fold
SuperFamily	SSF47113	4.5E-40	33	122	IPR009072	Histone-fold
Pfam	PF00808	1.5E-28	36	100	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	4.4E-23	64	82	No hit	No description
PROSITE pattern	PS00685	0	67	83	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	4.4E-23	83	101	No hit	No description
PRINTS	PR00615	4.4E-23	102	120	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 126 aa Download sequence Send to blast
MADVGSPRSQ DSPHSDDAGG HGGERDNSNV REQDRFLPIA NISRIMKKAL PANAKIAKDA 60 KETVQECVSE FISFITSEAS DKCQREKRKT INGDDLLWAM STLGFEEYLE PLKIYLQKYR 120 EVTEL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1n1j_A	1e-48	29	121	1	93	NF-YB
4awl_B	1e-48	29	121	2	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A	1e-48	29	121	2	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
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Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU019905	0.0	Selaginella moellendorffii CCAAT-box binding factor HAP3-like protein (HAP3D2) mRNA, HAP3D2-8 allele, partial cds

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002974019.1	3e-87	nuclear transcription factor Y subunit B-1 isoform X2
Refseq	XP_002974020.1	4e-87	nuclear transcription factor Y subunit B-1 isoform X1
Refseq	XP_002983471.1	3e-87	nuclear transcription factor Y subunit B-1
Refseq	XP_024534627.1	4e-87	nuclear transcription factor Y subunit B-1 isoform X1
Refseq	XP_024534628.1	3e-87	nuclear transcription factor Y subunit B-1 isoform X2
Refseq	XP_024544405.1	3e-87	nuclear transcription factor Y subunit B-1
Swissprot	O23310	7e-64	NFYB3_ARATH; Nuclear transcription factor Y subunit B-3
TrEMBL	D8RRZ6	1e-88	D8RRZ6_SELML; CCAAT-box binding factor HAP3
STRING	EFJ15373	2e-86	(Selaginella moellendorffii)
STRING	EFJ24975	2e-86	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP168	17	170

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14540.1	3e-66	nuclear factor Y, subunit B3

Link Out ? help Back to Top
Phytozome	100288
Entrez Gene	9654958 \| 9656385

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031] Han X, et al. Overexpression of the poplar NF-YB7 transcription factor confers drought tolerance and improves water-use efficiency in Arabidopsis. J. Exp. Bot., 2013. 64(14): p. 4589-601 [PMID:24006421] Hwang YH, et al. Functional conservation of rice OsNF-YB/YC and Arabidopsis AtNF-YB/YC proteins in the regulation of flowering time. Plant Cell Rep., 2016. 35(4): p. 857-65 [PMID:26754793] Hossain MA, et al. Identification of Novel Components of the Unfolded Protein Response in Arabidopsis. Front Plant Sci, 2016. 7: p. 650 [PMID:27242851] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]