PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

102071

Common Name

SELMODRAFT_450946

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

GRAS

Protein Properties

Length: 146aa MW: 16494.8 Da PI: 9.0037

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
102071	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	81.1	1.9e-25	16	144	248	374
GRAS 248 hnsesFlerflealeyysalfdsleaklpres..eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sd 347 ns+s+++r ea+e+y+ +f+ ++a+l++ er+++E+ g e+ n +aceg+er+er e +++W+e ++ aGF+ ++++ ++++ ak +l++++ + 102071 16 FNSPSLVARAREAFEFYAGMFEDIAASLGESRfaGERRFLEQL-RGLELLNTLACEGDERVERPEGYKQWHELMRGAGFEGYKIKPHVYAGAKQMLATYSnAR 117 699***********************9998989**98.9***************************************************999 PP GRAS 348 gyrveeesgslvlgWkdrpLvsvSaWr 374 +y+v + ++++l +++ L+++S W+ 102071 118 EYSVGRSGNWILLRRNRQVLIAISNWT 144 ************************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	16.008	1	123	IPR005202	Transcription factor GRAS
Pfam	PF03514	6.4E-23	16	144	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 146 aa Download sequence Send to blast
MEPKLFLNAA FPPVGFNSPS LVARAREAFE FYAGMFEDIA ASLGESRFAG ERRFLEQLRG 60 LELLNTLACE GDERVERPEG YKQWHELMRG AGFEGYKIKP HVYAGAKQML ATYSNAREYS 120 VGRSGNWILL RRNRQVLIAI SNWTS*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002974739.2	1e-101	scarecrow-like protein 31
TrEMBL	D8RUR2	1e-100	D8RUR2_SELML; GRAS family protein
STRING	EFJ24259	1e-100	(Selaginella moellendorffii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G29065.1	6e-19	GRAS family protein

Link Out ? help Back to Top
Phytozome	102071
Entrez Gene	9637200

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]