PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 103168
Common NameMICPUN_103168
Organism
Micromonas sp. RCC299
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
Family MYB
Protein Properties Length: 393aa    MW: 44429.1 Da    PI: 10.1558
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
103168genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.23.9e-13186229147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +g+W+ eE ++l d+v+++G + Wk + + +g  R +  c+++w++ 
           103168 186 KGKWSDEEKKKLTDLVAEYGEK-WKEVGKNLG--RPGHACRDKWRMM 229
                      79********************.********8..**********986 PP
2Myb_DNA-binding26.41.6e-08236301246
                      SSS-HHHHHHHHHHHHHTTTT......................-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg......................tWktIartmgkgRtlkqcksrwqk 46 
                      g W++ E   l ++v+++                         +Wk+I++++g +R++++c  +w+ 
           103168 236 GDWSPAEVAHLRELVNEYFAQnnaapgrgagegnehlplrdniNWKAISSKIG-TRSENMCMQKWYR 301
                      78****************99999******************************.***********95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.4998182IPR001005SANT/Myb domain
SuperFamilySSF466898.58E-14160230IPR009057Homeodomain-like
PROSITE profilePS5129415.168181234IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-11181229IPR009057Homeodomain-like
SMARTSM007171.9E-10185232IPR001005SANT/Myb domain
CDDcd001676.48E-7188229No hitNo description
PfamPF139211.2E-12189246No hitNo description
Gene3DG3DSA:1.10.10.602.5E-10230289IPR009057Homeodomain-like
SuperFamilySSF466896.58E-8233317IPR009057Homeodomain-like
SMARTSM007171.5E-8234305IPR001005SANT/Myb domain
PROSITE profilePS500907.143234303IPR017877Myb-like domain
CDDcd001676.98E-5238302No hitNo description
Gene3DG3DSA:1.10.10.608.0E-5290353IPR009057Homeodomain-like
PROSITE profilePS500904.275310357IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MGKEGKKSKE KDREKISKKK AADGDKEHGK KAKREKDGHK RVTGSLDGEN RPNNAVRPPK  60
KQKNGKEVVT VHEGANGIVA AERKAKNEAW NPKIEGQKFG EWSKDEKEEL DARIKEWAMA  120
HGKIDDYNNK KFDFLMQRRQ KQGGRGAKLP DSERKAFLEI ATGFPTRNPK QIYGYVSRHY  180
DSDNYKGKWS DEEKKKLTDL VAEYGEKWKE VGKNLGRPGH ACRDKWRMMR NNPKSGDWSP  240
AEVAHLRELV NEYFAQNNAA PGRGAGEGNE HLPLRDNINW KAISSKIGTR SENMCMQKWY  300
RIAPSPEETG QWAKGDDKTM LEGILKSDAD DEHKVAWEGL VPGRTLGQIK NRFRAAKKDI  360
PDHSNMSFDV LLAKMIEKYA PEISNAGALP AP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5eyb_A2e-15146366131340DNA-binding protein reb1
5eyb_B2e-15146366131340DNA-binding protein reb1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0013300.0CP001330.1 Micromonas sp. RCC299 chromosome 11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002504994.10.0predicted protein
TrEMBLC1EEL00.0C1EEL0_MICCC; Uncharacterized protein
STRINGXP_002504994.10.0(Micromonas sp. RCC299)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP23271315
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.19e-19MYB_related family protein
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]