PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information? help Back to Top

TF ID

103573

Common Name

MICPUN_103573

Organism

Taxonomic ID

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas

Family

Protein Properties

Length: 263aa MW: 28111 Da PI: 9.6675

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
103573	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	29.5	1.6e-09	95	135	2	42
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeN 42 +e k+ rr+++NRe+ArrsRqRK+a++ eL ++L + + 103573 95 EEEKKMRRMISNRESARRSRQRKQARLSELSAATQNLWQDR 135 6889**************************98777776555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	2.1E-7	90	163	No hit	No description
SMART	SM00338	5.7E-7	94	158	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.0E-6	95	131	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.381	96	159	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.58E-7	98	150	No hit	No description
CDD	cd14702	2.01E-13	99	149	No hit	No description
PROSITE pattern	PS00036	0	101	116	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 263 aa Download sequence Send to blast
MVAERRATRA SAGCGFPDAN PVVKLESSSP KGKPPPTRAK TQAKPAAPPK LPAAKANVVG 60 PNASPPQFPC FAKEEADDLA LLETVPEEEG EEEDEEEKKM RRMISNRESA RRSRQRKQAR 120 LSELSAATQN LWQDRCQALE NVRMMTQLLV KARDENSRLE QELAVLGRHA LSMTDEGAVL 180 LRDLDQHAKI ASARQEASRE LRRYAKKLSR SPSPTIAASI MTAGGSDATA MTTAPVIVAA 240 PTAVAASGPV RVNLGAVSCP GA*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	110	116	RRSRQRK
2	110	117	RRSRQRKQ

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00267	DAP	Transfer from AT2G18160	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP001577	0.0	CP001577.1 Micromonas sp. RCC299 chromosome 12, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002509201.1	0.0	predicted protein
TrEMBL	C1FIP6	0.0	C1FIP6_MICCC; Uncharacterized protein
STRING	XP_002509201.1	0.0	(Micromonas sp. RCC299)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP15251	2	2

Link Out ? help Back to Top
Phytozome	103573
Entrez Gene	8247838

Publications ? help Back to Top
Worden AZ, et al. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science, 2009. 324(5924): p. 268-72 [PMID:19359590]