PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

105005

Common Name

SELMODRAFT_105005

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

LBD

Protein Properties

Length: 114aa MW: 12339.4 Da PI: 8.7202

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
105005	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	105.4	4.8e-33	3	104	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 +C++C+vlr++C+++C+l+p++ p++q +++ +v+k+FG++ ++++++a+pe++r+++++sl+yeA+ r+ +Pv Gavg++++++++++q+++e++l 105005 3 SCNGCRVLRKGCSDSCILRPCLqwiegPEAQGHATVFVAKFFGRAGLMNFISAVPENQRPALFQSLLYEACGRTVNPVFGAVGLLWSGSWHVCQAAVETVLK 104 6***********************************************************************************************999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	19.401	2	108	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.1E-28	3	102	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 114 aa Download sequence Send to blast
RMSCNGCRVL RKGCSDSCIL RPCLQWIEGP EAQGHATVFV AKFFGRAGLM NFISAVPENQ 60 RPALFQSLLY EACGRTVNPV FGAVGLLWSG SWHVCQAAVE TVLKGGSLQA LKQP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002976218.2	8e-80	LOB domain-containing protein 39
Refseq	XP_002987125.2	8e-80	LOB domain-containing protein 39
Swissprot	Q9SN23	1e-66	LBD38_ARATH; LOB domain-containing protein 38
TrEMBL	D8RYR0	3e-78	D8RYR0_SELML; Uncharacterized protein (Fragment)
STRING	EFJ22478	4e-79	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP403	16	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49940.1	5e-69	LOB domain-containing protein 38

Link Out ? help Back to Top
Phytozome	105005
Entrez Gene	9648679

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]