PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 10510
Organism
Ostreococcus lucimarinus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family C3H
Protein Properties Length: 82aa    MW: 9886.58 Da    PI: 9.2131
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
10510genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.57.5e-063356226
             -S---SGGGGTS--TTTTT-SS-SS CS
  zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
             +++ Crffa++G+Ck  + C++ H+
    10510 33 RMPTCRFFAKYGECKE-PDCPYKHS 56
             5789***********9.*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.6E-5330IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.33E-6334IPR000571Zinc finger, CCCH-type
SMARTSM003560.0044329IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.981330IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.8963158IPR000571Zinc finger, CCCH-type
SMARTSM003565.0E-53157IPR000571Zinc finger, CCCH-type
SMARTSM00356215982IPR000571Zinc finger, CCCH-type
PROSITE profilePS501039.6856282IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006979Biological Processresponse to oxidative stress
GO:0034052Biological Processpositive regulation of plant-type hypersensitive response
GO:1900363Biological Processregulation of mRNA polyadenylation
GO:2000031Biological Processregulation of salicylic acid mediated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003723Molecular FunctionRNA binding
GO:0004521Molecular Functionendoribonuclease activity
GO:0005516Molecular Functioncalmodulin binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 82 aa     Download sequence    Send to blast
RKNYRQTVCR HWLRNLCMKG NACGFLHQFD KSRMPTCRFF AKYGECKEPD CPYKHSLEDM  60
KDCNMYKLGF CIHGSLCRFR HV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6dnh_C3e-2358265144Cleavage and polyadenylation specificity factor subunit 4
6fbs_C1e-2358264143Cleavage and polyadenylation specificity factor subunit 4
6fuw_C1e-2358264143Cleavage and polyadenylation specificity factor subunit 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0005851e-135CP000585.1 Ostreococcus lucimarinus CCE9901 chromosome 5, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001417675.12e-56predicted protein, partial
RefseqXP_022838922.16e-55Zinc finger, CCCH-type
SwissprotQ0DA501e-39C3H45_ORYSJ; Zinc finger CCCH domain-containing protein 45
TrEMBLA0A090M0Y81e-53A0A090M0Y8_OSTTA; Zinc finger, CCCH-type
TrEMBLA4RX175e-55A4RX17_OSTLU; Uncharacterized protein (Fragment)
STRINGABO959689e-56(Ostreococcus 'lucimarinus')
STRINGA0A090M0Y82e-54(Ostreococcus tauri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP349277