PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 105183
Common NameMICPUN_105183
Organism
Micromonas sp. RCC299
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
Family bZIP
Protein Properties Length: 236aa    MW: 24765.4 Da    PI: 8.606
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
105183genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1802.8e-25113175163
             XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
             e+elkr+rrkq+NRe+ArrsR+RK+ae+eeL  +v++L++eN +L+ ele+lk+++ +l++++
  105183 113 ERELKRQRRKQSNRESARRSRLRKQAECEELGGRVDALSTENVTLRAELERLKETCGALETDN 175
             89*******************************************************999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.9E-18109172No hitNo description
PfamPF001701.6E-22113175IPR004827Basic-leucine zipper domain
SMARTSM003381.4E-22113177IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.243115178IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.25E-12116171No hitNo description
CDDcd147023.08E-17118168No hitNo description
PROSITE patternPS000360120135IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0010629Biological Processnegative regulation of gene expression
GO:0090342Biological Processregulation of cell aging
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MQAPAQSQAA YSYGQQQMAP NPYAMWPQAM SNPYGGASQF MYPGYMGAYG AGAGAEGKDA  60
TANGDAAAYT NGAAAMWHEQ AAAAKAAAGG GAGGGGSNGV GGGGSNGEVW MDERELKRQR  120
RKQSNRESAR RSRLRKQAEC EELGGRVDAL STENVTLRAE LERLKETCGA LETDNTVLTD  180
KLKELKGPDA VEAVRKEVAK KKDEAKGEED GKKKENGKTG ELTNGKRKAE VKAEA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1129135RRSRLRK
2129136RRSRLRKQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00039PBMTransfer from AT4G36730Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0013230.0CP001323.1 Micromonas sp. RCC299 chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002499474.11e-168predicted protein
TrEMBLC1E0011e-166C1E001_MICCC; Uncharacterized protein
STRINGXP_002499474.11e-167(Micromonas sp. RCC299)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP4426911
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36730.23e-25G-box binding factor 1
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]