PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

105213

Common Name

SELMODRAFT_105213

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

NAC

Protein Properties

Length: 176aa MW: 20192.2 Da PI: 10.2747

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
105213	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	178.4	1.9e-55	15	141	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglk 103 lp+GfrFhPtdeelvv+yL+kk+e+k++++ vi+evd+yk+ PwdLp+k++ +e+ewyfF++rd+ky++g r+nra+ sgyWkatg+dk+++++++++vg+k 105213 15 LPAGFRFHPTDEELVVHYLCKKAESKPFPV-PVIAEVDLYKFSPWDLPSKAYFGEREWYFFTPRDRKYPNGARPNRAAGSGYWKATGTDKPIHTRGNRKVGVK 116 799*************************.89***********988999********************************************* PP NAM 104 ktLvfykgrapkgektdWvmheyrl 128 k Lvfy+g+apkg+kt+W+mheyrl 105213 117 KALVFYDGKAPKGVKTNWIMHEYRL 141 *********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.62E-66	8	169	IPR003441	NAC domain
PROSITE profile	PS51005	61.007	15	169	IPR003441	NAC domain
Pfam	PF02365	7.9E-28	16	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 176 aa Download sequence Send to blast
MAPAKFSTSS SQLHLPAGFR FHPTDEELVV HYLCKKAESK PFPVPVIAEV DLYKFSPWDL 60 PSKAYFGERE WYFFTPRDRK YPNGARPNRA AGSGYWKATG TDKPIHTRGN RKVGVKKALV 120 FYDGKAPKGV KTNWIMHEYR LVESSSHKPA KDHKSLRLDD WVLCRIYEKT SGAFKV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	4e-83	1	171	1	170	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family associated with male fertility. Involved in anther development, but not in senescence. Reduced expression of NAC5 via RNAi leads to male-sterility. {ECO:0000269\|PubMed:22278768}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00058	PBM	Transfer from AT1G61110	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, salt and cold treatments. {ECO:0000269\|PubMed:18813954}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002976404.2	1e-129	NAC domain-containing protein 72
Swissprot	Q8H4S4	2e-83	NAC10_ORYSJ; NAC domain-containing protein 10
TrEMBL	D8RZ08	1e-128	D8RZ08_SELML; Uncharacterized protein (Fragment)
STRING	EFJ22664	1e-128	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP17	15	800

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61110.1	3e-85	NAC domain containing protein 25

Link Out ? help Back to Top
Phytozome	105213
Entrez Gene	9646570

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]