PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

105591

Common Name

MICPUN_105591

Organism

Micromonas sp. RCC299

Taxonomic ID

296587

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas

Family

Nin-like

Protein Properties

Length: 344aa MW: 34902.6 Da PI: 10.5692

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
105591	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	83.2	2.6e-26	10	60	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +k+++le+ls++F+lpi+d+A++Lg+c+TvLK++CR++GI RWP+Rk+k+l 105591 10 SKSLTLEELSANFHLPINDVARKLGLCVTVLKQRCREHGITRWPYRKVKKL 60 689**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	18.28	1	81	IPR003035	RWP-RK domain
Pfam	PF02042	1.9E-22	12	60	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence Send to blast
MPKKRGGGQS KSLTLEELSA NFHLPINDVA RKLGLCVTVL KQRCREHGIT RWPYRKVKKL 60 DNIIHALECP GDGGVADATR RLETVKRTRE VLITDPNSKA HLRVGKLKAV RRRSLGSKSG 120 YGSGGSGSDN SGGTAFGVMR HRQNSSGIDG LLEAATTLSD GETPGTPTRE PDAIRDRSPR 180 ISGALQALTG GISAHDTDTG AGAEAAALAL NALKPGGAFQ AVRAAVDVAN KAAAPAAPAF 240 DANAYAAAMA AFAGHMGNAA AAAATPPPAP PTPANPMAAL MANPMFAWMA AMGNVAQAQA 300 QAAQAAQAAQ AAATPPAPNF LQMAAAAAAA AQAAQPQSAH QPL*

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence Send to blast

MPKKRGGGQS KSLTLEELSA NFHLPINDVA RKLGLCVTVL KQRCREHGIT RWPYRKVKKL  60
DNIIHALECP GDGGVADATR RLETVKRTRE VLITDPNSKA HLRVGKLKAV RRRSLGSKSG  120
YGSGGSGSDN SGGTAFGVMR HRQNSSGIDG LLEAATTLSD GETPGTPTRE PDAIRDRSPR  180
ISGALQALTG GISAHDTDTG AGAEAAALAL NALKPGGAFQ AVRAAVDVAN KAAAPAAPAF  240
DANAYAAAMA AFAGHMGNAA AAAATPPPAP PTPANPMAAL MANPMFAWMA AMGNVAQAQA  300
QAAQAAQAAQ AAATPPAPNF LQMAAAAAAA AQAAQPQSAH QPL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP001326	0.0	CP001326.1 Micromonas sp. RCC299 chromosome 5, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002502534.1	0.0	predicted protein
TrEMBL	C1E6D4	0.0	C1E6D4_MICCC; Uncharacterized protein
STRING	XP_002502534.1	0.0	(Micromonas sp. RCC299)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP84	16	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	7e-15	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	105591
Entrez Gene	8243820

Publications ? help Back to Top
Worden AZ, et al. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science, 2009. 324(5924): p. 268-72 [PMID:19359590]