PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 106326
Common NameMICPUN_106326
Organism
Micromonas sp. RCC299
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
Family G2-like
Protein Properties Length: 307aa    MW: 31527.3 Da    PI: 6.7589
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
106326genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like93.22.2e-2959112155
  G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
              kprl+WtpeLH rF++av++L G+++A+Pktil+lm+v+g+t+e+v+SHLQkYRl
   106326  59 KPRLVWTPELHMRFMNAVNHL-GIKNAVPKTILQLMNVEGMTRENVASHLQKYRL 112
              79*******************.********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.86656115IPR017930Myb domain
SuperFamilySSF466892.06E-2056116IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.5E-3057116IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-2459112IPR006447Myb domain, plants
PfamPF002498.4E-762111IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MSDRSNEESG SPEIAPRDDD DTERHKTNGD ATTAGGDDDV HGGGHHHGGG GGGGKQPKKP  60
RLVWTPELHM RFMNAVNHLG IKNAVPKTIL QLMNVEGMTR ENVASHLQKY RLYLKRLAGV  120
PPSTPLPADI MQRVHPFQYP GTATAAGAAA MHAAGGMPSA TWAPTIEQMH AGVPPGMPTG  180
FPDFQNLPPG HAGPPSADAF KDAEAFHAQM AATAQFMSYM GAAGAAAGGF GPPPGAVGNA  240
GAPGGSEEAA MNAAAMMRQG YSAGYPAMPY GSPPMPAGFM PPPWMVPGAP SPGSGSFHDD  300
PSSRRG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A3e-3059115157Transcription factor LUX
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0015770.0CP001577.1 Micromonas sp. RCC299 chromosome 12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002509350.10.0g2-like myb-family transcription factor
TrEMBLC1FJJ10.0C1FJJ1_MICCC; G2-like myb-family transcription factor
STRINGXP_002509350.10.0(Micromonas sp. RCC299)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1111645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46640.23e-33G2-like family protein
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]