PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

106490

Common Name

SELMODRAFT_176081

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

GRAS

Protein Properties

Length: 134aa MW: 15410.7 Da PI: 4.7974

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
106490	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	62.4	9.4e-20	2	130	250	374
GRAS 250 sesFlerflealeyysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk...sdg 348 s+ F +rf al++ + ++ +e+ l +e+ e+ +++++i++vva eg er+er +++++W +r ++aGF+ +p++ ++ + +k + + ++ 106490 2 SPFFIQRFEGALDTLFTRMELFETLLLQEDmPEEYDFMGNIIAKAIMDVVALEGVERIERPNSYRSWDSRARRAGFELLPVRPETIEVVKDVWCSSSsklNNN 104 5789*******9999999999888777775555555556*************************************998887776543333124677 PP GRAS 349 yrveeesgslvlgWkdrpLvsvSaWr 374 +++ + ++l+lgWk+ ++++SaWr 106490 105 FKLGVDGHWLLLGWKESIVFAMSAWR 130 ***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	10.391	1	107	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.2E-17	2	130	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 134 aa Download sequence Send to blast
SSPFFIQRFE GALDTLFTRM ELFETLLLQE DMPEEYDFMG NIIAKAIMDV VALEGVERIE 60 RPNSYRSWDS RARRAGFELL PVRPETIEVV KDVWCSSSSK LNNNFKLGVD GHWLLLGWKE 120 SIVFAMSAWR TSK*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024537982.1	6e-87	scarecrow-like protein 34
TrEMBL	D8S1C1	6e-87	D8S1C1_SELML; Uncharacterized protein
STRING	EFJ21821	9e-88	(Selaginella moellendorffii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07520.1	7e-23	GRAS family protein

Link Out ? help Back to Top
Phytozome	106490
Entrez Gene	9638660

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]