PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 107503
Common NameSELMODRAFT_107503
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family HSF
Protein Properties Length: 191aa    MW: 21807.7 Da    PI: 10.0969
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
107503genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind119.32.2e-37261172102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d++++ +isws+++nsfvv+++ ef++++Lp+yFkhsn++SFvRQLn+YgFkkv+ ++         weF+++ F +g+k+ll++i+
        107503  26 FLTKTYDMVDDPATNGIISWSATNNSFVVWNPPEFSRDLLPRYFKHSNYSSFVRQLNTYGFKKVDPDR---------WEFANEDFLRGQKSLLKNIH 113
                   9********************999*****************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+++
        107503 114 RRRN 117
                   *986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467853.67E-3721115IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.2E-6122115IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.105.9E-4023115IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.8E-192649IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.1E-3226115IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-196476IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406589IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-197789IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MQESGLRSAA SPQPLEALQG NAPPPFLTKT YDMVDDPATN GIISWSATNN SFVVWNPPEF  60
SRDLLPRYFK HSNYSSFVRQ LNTYGFKKVD PDRWEFANED FLRGQKSLLK NIHRRRNVGG  120
TSSGSPRSSP SISTVVAEQQ PCVEVGQFGG VEGEVERLRR DRNMLMVELV RMRQQQILTQ  180
RGMQQMMQRL Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A6e-272411518120Heat shock factor protein 1
5d5u_B6e-272411527129Heat shock factor protein 1
5d5v_B6e-272411527129Heat shock factor protein 1
5d5v_D6e-272411527129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1156161RLRRDR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002977898.21e-139heat shock factor protein HSF30
RefseqXP_002979424.21e-139heat stress transcription factor A-2b
SwissprotQ9LQM75e-77HFA1D_ARATH; Heat stress transcription factor A-1d
TrEMBLD8S3C31e-139D8S3C3_SELML; Uncharacterized protein (Fragment)
STRINGEFJ212361e-140(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32330.13e-61heat shock transcription factor A1D
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]
  2. Higashi Y, et al.
    HsfA1d, a protein identified via FOX hunting using Thellungiella salsuginea cDNAs improves heat tolerance by regulating heat-stress-responsive gene expression.
    Mol Plant, 2013. 6(2): p. 411-22
    [PMID:23393165]
  3. Jung HS, et al.
    Subset of heat-shock transcription factors required for the early response of Arabidopsis to excess light.
    Proc. Natl. Acad. Sci. U.S.A., 2013. 110(35): p. 14474-9
    [PMID:23918368]
  4. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  5. Ohama N, et al.
    The Transcriptional Cascade in the Heat Stress Response of Arabidopsis Is Strictly Regulated at the Level of Transcription Factor Expression.
    Plant Cell, 2016. 28(1): p. 181-201
    [PMID:26715648]