PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 108666
Common NameMICPUN_108666
Organism
Micromonas sp. RCC299
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
Family C3H
Protein Properties Length: 228aa    MW: 24214.4 Da    PI: 4.3896
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
108666genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.62.1e-08325326
             S---SGGGGTS--TTTTT-SS-SS CS
  zf-CCCH  3 telCrffartGtCkyGdrCkFaHg 26
             +e+C++++  G C+ G+ C+F+H+
   108666  3 REICKYYMH-GACNKGAACRFSHD 25
             79***8888.*************6 PP
2zf-CCCH28.72.3e-092953126
             --S---SGGGGTS--TTTTT-SS-SS CS
  zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
             +k   C ++++ G C+yGd+C++ H+
   108666 29 PKSTVCTYYLA-GNCSYGDKCRYDHV 53
             57789******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.525127IPR000571Zinc finger, CCCH-type
SMARTSM003565.3E-6126IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-6325IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.84E-7325IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-4426IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.4082855IPR000571Zinc finger, CCCH-type
SMARTSM003565.3E-72854IPR000571Zinc finger, CCCH-type
PfamPF006426.2E-73053IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-63052IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-53052IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MSREICKYYM HGACNKGAAC RFSHDIQAPK STVCTYYLAG NCSYGDKCRY DHVRPAGIQG  60
PPAGLNRPAP PMTVPRPNVG GNISAGAREF VPLNAMMGGM SVGGARPYHP SAQAPAWQPA  120
PPGGAYPPQG GGDEQDDWGY EDEDGNWVSF NEGSGKEEVE FLKSQLPSED DFLDGLGADT  180
GPHREEQDGG GDEWGYYDDA GNWVGFGGEV DSYLHAQQGG AYGGQVR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0013280.0CP001328.1 Micromonas sp. RCC299 chromosome 7, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002504023.11e-167predicted protein
TrEMBLC1EAX31e-165C1EAX3_MICCC; Uncharacterized protein
STRINGXP_002504023.11e-166(Micromonas sp. RCC299)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP19181212
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.22e-15C3H family protein
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]