PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

108669

Common Name

SELMODRAFT_108669, WRKY_19

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

WRKY

Protein Properties

Length: 62aa MW: 6621.38 Da PI: 8.9147

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
108669	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	49	1.2e-15	5	48	4	46
SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTT CS WRKY 4 gynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpk 46 g + +K q +kgs++pr+YY+C+s gCp++k+ver+ +dp+ 108669 5 GGTHQKASQAGIKGSPHPRGYYKCSSLrGCPARKHVERCLDDPT 48 55667888999************998**********9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50811	17.098	1	59	IPR003657	WRKY domain
SuperFamily	SSF118290	9.02E-13	4	48	IPR003657	WRKY domain
Gene3D	G3DSA:2.20.25.80	6.6E-15	4	48	IPR003657	WRKY domain
Pfam	PF03106	3.6E-12	6	47	IPR003657	WRKY domain
SMART	SM00774	1.6E-7	16	58	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 62 aa Download sequence Send to blast
MFLDGGTHQK ASQAGIKGSP HPRGYYKCSS LRGCPARKHV ERCLDDPTTD AGERSHGVQP 60 Q*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002970246.1	2e-21	probable WRKY transcription factor 11
Refseq	XP_024531200.1	2e-21	probable WRKY transcription factor 11
Swissprot	Q32SG4	9e-17	WRKY1_MAIZE; Protein WRKY1
TrEMBL	D8S545	8e-38	D8S545_SELML; Uncharacterized protein WRKY_19
STRING	EFJ20540	1e-38	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP14	17	875

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G31550.2	2e-18	WRKY DNA-binding protein 11

Link Out ? help Back to Top
Phytozome	108669
Entrez Gene	9653707

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]