PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 108722
Common NameMICPUN_108722
Organism
Micromonas sp. RCC299
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
Family C2H2
Protein Properties Length: 221aa    MW: 24856.7 Da    PI: 8.7382
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
108722genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.000645577123
             EEETTTTEEESSHHHHHHHHHHT CS
  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
             ++C +C+ksF  +  L  H ++H
   108722 55 HPCDKCDKSFHFPARLIEHKNLH 77
             78******************998 PP
2zf-C2H2187.7e-0683107123
              EEET..TTTEEESSHHHHHHHHHHT CS
  zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
              +kC+  +C++ F+++++L++H ++H
   108722  83 FKCTieNCDEAFPTSDQLRTHAQRH 107
              89********************999 PP
3zf-C2H216.91.8e-05139163123
              EEET..TTTEEESSHHHHHHHHHHT CS
  zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
              + C+   C+k F++   L++H  +H
   108722 139 FACEdpECDKKFKTARALEKHADVH 163
              679999***************9887 PP
4zf-C2H222.53e-07170194223
              EET..TTTEEESSHHHHHHHHHH.T CS
  zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
              +C    C++sF+rk+ L+rH r+ H
   108722 170 VCDvaGCDRSFKRKDGLQRHKRNeH 194
              688889****************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.1E-75376IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.81E-1153107No hitNo description
SMARTSM003550.315577IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.9655582IPR007087Zinc finger, C2H2
PROSITE patternPS0002805777IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.4E-1177107IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00283107IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.72383107IPR007087Zinc finger, C2H2
PROSITE patternPS00028085107IPR007087Zinc finger, C2H2
SMARTSM003550.063111133IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.4E-6111134IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF128740.0056111130No hitNo description
PROSITE profilePS5015711.552111138IPR007087Zinc finger, C2H2
PROSITE patternPS000280113133IPR007087Zinc finger, C2H2
SuperFamilySSF576672.03E-11120175No hitNo description
Gene3DG3DSA:3.30.160.601.8E-9135161IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.819139168IPR007087Zinc finger, C2H2
SMARTSM003550.043139163IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280141163IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.0E-8162191IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0012169194IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.432169194IPR007087Zinc finger, C2H2
PROSITE patternPS000280171194IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MASATTIGKD SAHDHESDSG HDRENTPAPS EGGGGGGGGD ETQPGPFSLK RKKAHPCDKC  60
DKSFHFPARL IEHKNLHTGK TPFKCTIENC DEAFPTSDQL RTHAQRHLLR FRCEICHKRF  120
QTESIRRTHM LTHSTVRPFA CEDPECDKKF KTARALEKHA DVHRPEEPQV CDVAGCDRSF  180
KRKDGLQRHK RNEHGIRFKK RRSARKEDGP GFEDANVVAQ *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2i13_A4e-175319520186Aart
2i13_B4e-175319520186Aart
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1180201KRKDGLQRHKRNEHGIRFKKRR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0015750.0CP001575.1 Micromonas sp. RCC299 chromosome 8, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002507801.11e-161predicted protein
TrEMBLC1FFC31e-159C1FFC3_MICCC; Uncharacterized protein
STRINGXP_002507801.11e-160(Micromonas sp. RCC299)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP70653
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04240.16e-13C2H2 family protein
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]