PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

109106

Common Name

MICPUN_109106

Organism

Micromonas sp. RCC299

Taxonomic ID

296587

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas

Family

bZIP

Protein Properties

Length: 405aa MW: 43764.2 Da PI: 6.3028

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
109106	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	24.4	6.4e-08	179	237	3	58
XXCHHHCHHHHHHHHHHHHHHHHHHHHH...HHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeiee...LeekvkeLeaeNkaLkkeleelkkevak 58 ++ + rr+++NR A+ r+R++ k++++e L+ v +L e +L + +l+ ++++ 109106 179 KDPKYRRRIQNRMASARFRAKAKERQQEldrLKSQVTQLRREKADLEAQCRNLNVMIES 237 67889****************77766661115667888888888888888888888775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.7E-4	178	237	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.0E-7	178	235	No hit	No description
Pfam	PF07716	4.5E-6	180	231	IPR004827	Basic-leucine zipper domain
CDD	cd14686	1.75E-10	182	227	No hit	No description
PROSITE pattern	PS00036	0	184	199	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 405 aa Download sequence Send to blast
MDPSDIDPVL KDLGPLLSSP RGGTAVPGHN LISRSVAPAP GQLGRMPSVP ADAGAFFDEN 60 DLANLDGVLD FDVPGGGAGA GLGQSGNFGG PNSGIYNSGY IMDVDRANTT GDADHAGGLN 120 TSSEDLDFYG SDHGDDHGGG SGTKGGKGKK GHGRRHSGES FEIGSSGLDQ VDVSDLDPKD 180 PKYRRRIQNR MASARFRAKA KERQQELDRL KSQVTQLRRE KADLEAQCRN LNVMIESAAE 240 QHRTSTMAWI VDHFWLRRKV HFKTLANSVR WMVRGQYRKG MTDAVLRAKL AAEGIVREEE 300 SSHARDDEPN DDSDVSMDDA GYDKNRPGER LRYDTNRHEA RDPRGQTLGE MMSGGAGDGP 360 DGPTLSPGTS WKLWATLQKL GSFGRSKPPV DPDTGEPINR PYTR*

Sequence ? help Back to Top

Protein Sequence Length: 405 aa Download sequence Send to blast

MDPSDIDPVL KDLGPLLSSP RGGTAVPGHN LISRSVAPAP GQLGRMPSVP ADAGAFFDEN  60
DLANLDGVLD FDVPGGGAGA GLGQSGNFGG PNSGIYNSGY IMDVDRANTT GDADHAGGLN  120
TSSEDLDFYG SDHGDDHGGG SGTKGGKGKK GHGRRHSGES FEIGSSGLDQ VDVSDLDPKD  180
PKYRRRIQNR MASARFRAKA KERQQELDRL KSQVTQLRRE KADLEAQCRN LNVMIESAAE  240
QHRTSTMAWI VDHFWLRRKV HFKTLANSVR WMVRGQYRKG MTDAVLRAKL AAEGIVREEE  300
SSHARDDEPN DDSDVSMDDA GYDKNRPGER LRYDTNRHEA RDPRGQTLGE MMSGGAGDGP  360
DGPTLSPGTS WKLWATLQKL GSFGRSKPPV DPDTGEPINR PYTR*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP001330	0.0	CP001330.1 Micromonas sp. RCC299 chromosome 11, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002505110.1	0.0	predicted protein
TrEMBL	C1EDI4	0.0	C1EDI4_MICCC; Uncharacterized protein
STRING	XP_002505110.1	0.0	(Micromonas sp. RCC299)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP15437	2	2

Link Out ? help Back to Top
Phytozome	109106
Entrez Gene	8247228

Publications ? help Back to Top
Worden AZ, et al. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science, 2009. 324(5924): p. 268-72 [PMID:19359590]