PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information? help Back to Top

TF ID

109344

Common Name

MICPUN_109344

Organism

Taxonomic ID

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas

Family

Protein Properties

Length: 262aa MW: 27699.5 Da PI: 5.2473

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
109344	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.3	1.3e-08	82	133	2	54
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + +++ rE+ RR+ +N++f L ll ++ +a+ K +Ka+i+++A Ik L 109344 82 KNKKSRREKLRREALNDRFMGLSALLDPN-GAGPLKTDKATIVTEAAVVIKRL 133 567899******************887.579999*************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	8.9E-12	77	151	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.38E-10	78	138	No hit	No description
PROSITE profile	PS50888	12.1	80	133	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.7E-11	82	157	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.4E-6	82	133	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.3E-7	86	139	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence Send to blast
MAAKPEQKET EMVKDEREDS GDWLADIFDA ADEGVITSLE MSEMSLPQET IAALEAEGSG 60 AACAPGSNEK RGREEGGRES AKNKKSRREK LRREALNDRF MGLSALLDPN GAGPLKTDKA 120 TIVTEAAVVI KRLREELAKL SATLETLQKT NATLEKEKSG LAADKAALQQ DKAKLEHQLH 180 CFMSSMPFAS PPPGAAFAPV PGPFHPPGAA GAVVTQQNGG AVKLAPNQPA GGMMPVMWSL 240 PPLVVHTTTA EEDARLHAPC A*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	86	93	RREKLRRE

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP001331	0.0	CP001331.1 Micromonas sp. RCC299 chromosome 13, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002505435.1	0.0	predicted protein
TrEMBL	C1EG09	0.0	C1EG09_MICCC; Uncharacterized protein
STRING	XP_002505435.1	0.0	(Micromonas sp. RCC299)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP5460	6	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G54680.1	5e-14	bHLH family protein

Link Out ? help Back to Top
Phytozome	109344
Entrez Gene	8248614

Publications ? help Back to Top
Worden AZ, et al. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science, 2009. 324(5924): p. 268-72 [PMID:19359590]