PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 109612
Common NameMICPUN_109612
Organism
Micromonas sp. RCC299
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
Family MYB
Protein Properties Length: 258aa    MW: 28331.3 Da    PI: 10.8789
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
109612genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.11.8e-072880348
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.......TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmg.......kgRtlkqcksrwqkyl 48
                     +WT  E e lv +v  +G g+W+ I +  +       + R++ ++k++w+++l
           109612 28 PWTLPEVEALVTGVGHYGRGQWADIKSLEQdgvaaalESRSAVDLKDKWRNLL 80
                     8**************************************************96 PP
2Myb_DNA-binding22.52.7e-07161210248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT....TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg....kgRtlkqcksrwqkyl 48 
                       +WT  E + lvd+v+   g +W+ I +  g    ++Rt+ ++k++w+++l
           109612 161 SPWTLTESKALVDGVESCAGCRWTVIKKL-GleslERRTAMDLKDKWRNLL 210
                      58*********************998665.559999*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.1452184IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.5E-122381IPR009057Homeodomain-like
SuperFamilySSF466894.11E-132482IPR009057Homeodomain-like
SMARTSM007172.7E-52582IPR001005SANT/Myb domain
CDDcd116606.75E-162781No hitNo description
PfamPF002491.0E-52880IPR001005SANT/Myb domain
PROSITE profilePS512949.25155214IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.2E-9156211IPR009057Homeodomain-like
SMARTSM007170.027159212IPR001005SANT/Myb domain
CDDcd116603.92E-13162210No hitNo description
SuperFamilySSF466893.52E-14162239IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MYTAASAAAA KRRMLPSRGG GRQKVHRPWT LPEVEALVTG VGHYGRGQWA DIKSLEQDGV  60
AAALESRSAV DLKDKWRNLL RIAMLPVLYK RREATEMPPA LLARVRELAA QKGENAEGRT  120
RGGGGGRESS PGRGMDDDDA TNASEASMPA SKGARRSKHH SPWTLTESKA LVDGVESCAG  180
CRWTVIKKLG LESLERRTAM DLKDKWRNLL QLASLPQQSR RKAETPPELL QRVLWLEAKY  240
GTARRKGRKS ADKESAK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2roh_A5e-141392486118Telomere binding protein-1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0013340.0CP001334.1 Micromonas sp. RCC299 chromosome 16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002506645.10.0hypothetical protein MICPUN_109612
TrEMBLC1EIQ70.0C1EIQ7_MICCC; Uncharacterized protein
STRINGXP_002506645.10.0(Micromonas sp. RCC299)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1276916
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.25e-16TRF-like 6
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]